Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3965g00032 ATGATGGAGGTTGATGAGGAGTATATTCAAGCATCAGAAGAAAGCTTCATCAGCTGCTCAGAGCCACCTCAAAATCCAAGGAAGAAAAACAAAGTGGTGAACAAGAGGAGGTTTAGTGATGAACAAATCAGATCATTGGAGTGCATATTTGAGTCAGAGTCCAAGTTAGAACCAAGGAAGAAGATCCAGGTAGCAAGAGATCTGGGGCTGCAGCCTCGCCAAGTTGCCATATGGTTCCAGAACAGAAGAGCGAGAGGGAAATCCAAATGGATAGAGCAAGAGTACAGGAAGCTCAGAGATGACTATGACAATTTAGTGTCCAGGTTTGAGTCCCTTCAGAAAGAGAAGGAGTCCTTGCAAGTGGAGTTGCAGAATCTGCATGATCTAATGGAGGCATCTCACAATGGTGAAGAGAAAAAGAGCTCAGATTGGAGGAGTGAAGTGAAGCCAAGTTCCTCTTATGAGGGTTTGGAGGTCAAAGAAGGCACGCATTTACAAGATCAAAGTGAAATGAGCAAGAAGAATGGATATTCTGATGATACAGAATACCAACTTCTGAGAATGGACGAGCTTGAAAAATGGTACAGTGGAGATCCAAGTGGCCTCTTAGATCAACCTTGTAGTTCACAATGGTTGGATTTCTGGACTTGA 651 0.4347 MMEVDEEYIQASEESFISCSEPPQNPRKKNKVVNKRRFSDEQIRSLECIFESESKLEPRKKIQVARDLGLQPRQVAIWFQNRRARGKSKWIEQEYRKLRDDYDNLVSRFESLQKEKESLQVELQNLHDLMEASHNGEEKKSSDWRSEVKPSSSYEGLEVKEGTHLQDQSEMSKKNGYSDDTEYQLLRMDELEKWYSGDPSGLLDQPCSSQWLDFWT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3965g00032 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 174 IPR045224 GO:0003700
Pral3965g00032 216 MobiDBLite consensus disorder prediction 13 27 - -
Pral3965g00032 216 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
Pral3965g00032 216 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Pral3965g00032 216 CDD homeodomain 35 90 IPR001356 GO:0003677
Pral3965g00032 216 SMART HOX_1 27 93 IPR001356 GO:0003677
Pral3965g00032 216 MobiDBLite consensus disorder prediction 133 178 - -
Pral3965g00032 216 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Pral3965g00032 216 Coils Coil 95 129 - -
Pral3965g00032 216 FunFam Homeobox-leucine zipper protein ATHB-7 13 89 - -
Pral3965g00032 216 SUPERFAMILY Homeodomain-like 19 88 IPR009057 -
Pral3965g00032 216 Gene3D - 16 93 - -
Pral3965g00032 216 MobiDBLite consensus disorder prediction 1 33 - -
Pral3965g00032 216 MobiDBLite consensus disorder prediction 160 177 - -
Pral3965g00032 216 Pfam Homeodomain 35 87 IPR001356 GO:0003677
Pral3965g00032 216 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Pral3965g00032 216 Pfam Homeobox associated leucine zipper 90 130 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3965g00032 Pral-Chr3965 189648 191150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3965g00032 12 162 Homeobox Transcription Factor Family AT2G46680 51.656 1.54e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral3965g00032 Homeodomain 7.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3965g00032 K09338 - gmx:100499926 252.292