Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral3965g00022 | ATGTCACAGCCGAGGCAGAATAGGATGATGAATCCAAGCAATGCAAAACCAGCTGTTGACACCACTTATACAAAGATCTTCGTCGGAGGCTTGGCTTGGGAGACTAAGAGAGACTCTCTCAGACGCTATTTTGAGCAGTTTGGAGAGATCTCAGAGGCCGTCGTCATCACTGACAGAAACACTGGAGCATCAAAAGGCTATGGCTTTGTGACTTTTAAGGATCCTGACTCTGCAATAAGAGCTTGTCAGAATCCCTATCCTTTGATTGATGCGAGGAGGGCTAACTGTAATCTTGCAGCCCTTGGGGCACGCAAATTCAACCCATCTACCGCAGGAGCCGAGAAATTCAACCCCAGTTCATGGGCTATGGTACCAATCCCATTTCAAGGGACCTCTTCATATTACAATCAACACATACCCCATTACACTTTTCCCTTTCCACCACCCTACAGGTATCCCGGTTATCCTCCCTCACAAGAAATCTATGCAATGAACTACTATAATGTTTACGGAGGACAACAGGTTCCATTTCGATGGCGTCCAGCAATATACCAACCATTTTATGGGCTAAGTAATTCAAGGAGATTCCCAGAAGAAGCAATGGGGAAGAAGACACAGTACTCTGAAATACCACCCCAGGAAATGTTGGCAGTTGTTGGGGTACCACCAGAACCTATTCCAGTTTCTCCATCAATACCCACCTCTGGTTTAGTCACAGCAACAGTTTCTGCTTCTGCAGCAACCAAGACAGGATCGTCCCCTGAACGCAAATCTTCAGATTAG | 783 | 0.4623 | MSQPRQNRMMNPSNAKPAVDTTYTKIFVGGLAWETKRDSLRRYFEQFGEISEAVVITDRNTGASKGYGFVTFKDPDSAIRACQNPYPLIDARRANCNLAALGARKFNPSTAGAEKFNPSSWAMVPIPFQGTSSYYNQHIPHYTFPFPPPYRYPGYPPSQEIYAMNYYNVYGGQQVPFRWRPAIYQPFYGLSNSRRFPEEAMGKKTQYSEIPPQEMLAVVGVPPEPIPVSPSIPTSGLVTATVSASAATKTGSSPERKSSD | 260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral3965g00022 | 260 | SMART | rrm1_1 | 25 | 97 | IPR000504 | GO:0003723 | |
| Pral3965g00022 | 260 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 99 | IPR035979 | GO:0003676 | |
| Pral3965g00022 | 260 | Gene3D | - | 1 | 112 | IPR012677 | - | |
| Pral3965g00022 | 260 | PANTHER | BOULE-RELATED | 15 | 247 | - | - | |
| Pral3965g00022 | 260 | MobiDBLite | consensus disorder prediction | 239 | 260 | - | - | |
| Pral3965g00022 | 260 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 101 | IPR000504 | GO:0003723 | |
| Pral3965g00022 | 260 | CDD | RRM_RBM24_RBM38_like | 24 | 99 | - | - | |
| Pral3965g00022 | 260 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 83 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral3965g00022 | Pral-Chr3965 | 75528 | 77437 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral3965g00022 | 20 | 157 | C2H2 Transcription Factor Family | AT2G19380 | 31.098 | 2.60e-15 | 73.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral3965g00022 | - | - | adu:107469851 | 311.997 |