Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3965g00021 ATGGCTGTTGCTGAGAATGTTGGGGCCATAATCGGCCCTTCTGGTGAAAATTTGGAAAACCGTGTAGTATCATCTGACTCGACTGTACCCAATGAACTGGAGAAATCGAAGCTCAAACCTGGTTCCATGGGAAATGGTATAGAAACTAATGTCCAGCCTGTCAACGGTGATCAGAATCTGAACGCTGTCTTCAACAACAAAGACATCGTTTCGGCTACTATGTCAGTCCCGAATAATAACTATAAAGCTCAGATGGCTCAGATGCGAAATGGATTTGAAGAAAATGGGGTCCAGACTCAGCAGATGGTGATGAACAATGGTGGATACGGCATTAACCAGATTTCTAATGGGGTGAGAAATGGCGGAGACGACAATGGGGAAAGTTTCAAGCGAGATATGAGGGATTTGGCGGAGCTATTGTCGAAGTTGAATCCTATGGCTGAAGAATTTGTGCCCCCATCGCTTACTAAAAATCATGGGATCTTAGGCGGTGCGGGAGGATTTGGCTACGCTAACAATTTTCTATTACAGGCTAACTATGGCAATGCCAATGGTCAAATTAACAGAAGGAGGAAGAATGGCTATAATCAGGGTAAGAGAAGAATGAATCATAAGATGGATGTGGAAAAGAGAGAAGAGATGATAAGAAGGACCGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCGGCTCTCTTTCTTAACTGTGGGCAGGTTGTTGATTGTCGAGTATGTGGGGATCCAAATTCCATTCTTCGTTTTGCCTTCATTGAGTTCACAGATGAAGAAGGTGCTAGGGCCGCTTTGAATCTATCTGGCACTATGCTTGGATATTATCCCGTGAGAGTGCTGCCTTCAAAAACTGCCATTGCACCAGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAACGTGAGATGTGTTCAAGAACCATTTATTGCACAAATATCGACAAAAAGGTTACTCAGGCAGATGTCAAACTCTTCTTTGAGTCTCTCTGTGGAGAGGTTCATCGATTGAGGCTTCTTGGTGATTATCATCATTCAACTCGGATTGCATTTGTTGAGTTCATGATGGCTGAAAGTGCAATTGCAGCTCTGAACTGTAGCGGTGTGATTTTGGGGTCACTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTCCGGTCTCGCACGCCTCGTTCTCACATGCACTGA 1209 0.4433 MAVAENVGAIIGPSGENLENRVVSSDSTVPNELEKSKLKPGSMGNGIETNVQPVNGDQNLNAVFNNKDIVSATMSVPNNNYKAQMAQMRNGFEENGVQTQQMVMNNGGYGINQISNGVRNGGDDNGESFKRDMRDLAELLSKLNPMAEEFVPPSLTKNHGILGGAGGFGYANNFLLQANYGNANGQINRRRKNGYNQGKRRMNHKMDVEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVHRLRLLGDYHHSTRIAFVEFMMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRTPRSHMH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3965g00021 402 SUPERFAMILY RNA-binding domain, RBD 187 293 IPR035979 GO:0003676
Pral3965g00021 402 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 138 396 - -
Pral3965g00021 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 390 IPR000504 GO:0003723
Pral3965g00021 402 Pfam Ataxin-2 C-terminal region 140 154 IPR009818 -
Pral3965g00021 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 281 IPR000504 GO:0003723
Pral3965g00021 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 383 IPR000504 GO:0003723
Pral3965g00021 402 FunFam Polyadenylate-binding protein-interacting protein 10 308 386 - -
Pral3965g00021 402 FunFam Polyadenylate-binding protein-interacting protein 11 180 294 - -
Pral3965g00021 402 CDD RRM1_CID8_like 215 294 IPR034823 -
Pral3965g00021 402 SMART rrm1_1 218 288 IPR000504 GO:0003723
Pral3965g00021 402 SMART rrm1_1 315 386 IPR000504 GO:0003723
Pral3965g00021 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 292 IPR000504 GO:0003723
Pral3965g00021 402 Gene3D - 178 294 IPR012677 -
Pral3965g00021 402 Gene3D - 301 398 IPR012677 -
Pral3965g00021 402 CDD RRM2_CID8_like 310 391 IPR034825 -
Pral3965g00021 402 MobiDBLite consensus disorder prediction 21 45 - -
Pral3965g00021 402 SUPERFAMILY RNA-binding domain, RBD 305 395 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3965g00021 Pral-Chr3965 67327 71909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3965g00021 216 385 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 1.47e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3965g00021 - - pcin:129303146 771.926