Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3965g00017 ATGAGTGGTCGATTTTCTCGCACTATTTATGTTGGCAACCTGCCCTCAGATATCAGAGAGTCAGAAATTGAGGATTTATTCTACAAGTATGGTCGTATATTGGATATCGAGTTAAAGATTCCACCTCGACCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATTCGTGGTCGTGATGGCTACAATTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCGCATGGTGGTAGGGGGCCATCATCAAGTGATCGGCGCGGTTATGGTGGTGGTGGTGGGAGCCGTTTTGGCATCTCACGTCATTCTGAATACCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAGGATTTAAAGGATCATATGCGCAAAGCTGGTGATGTATGCTTTGCTGAGGTTTCACGTGATAGTGAAGGCACATTTGGCATTGTTGACTACACTAATTATGACGACATGAAATATGCTATTCGAAAACTTGATGACACTGAATTTAGAAACCCATGGGCAAGAGCCTACATTCGGGTGAAGAAATATGAGGCCAGTCCCACAAGGAGCCGCAGCAGGAGCCCTGGCAGAAGCAGAAGTCCTAAAAGGATTAGAAGTCGGTCATTGGAGCGATCTGTGTCTAGATCACTATCTAGGTCTAGATCACCATCGCCAATCAAATCTAGGCCAAGATCGCCATCACGTTCTCGGTCTCGGTCACAATCTGGATCACCACGCCAGGCTCGATCGGCCAGTGGTTGA 771 0.4656 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGSRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYEASPTRSRSRSPGRSRSPKRIRSRSLERSVSRSLSRSRSPSPIKSRPRSPSRSRSRSQSGSPRQARSASG 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3965g00017 256 CDD RRM2_SF2_plant_like 110 185 - -
Pral3965g00017 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Pral3965g00017 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Pral3965g00017 256 MobiDBLite consensus disorder prediction 81 100 - -
Pral3965g00017 256 FunFam serine/arginine-rich splicing factor SR34A-like 110 187 - -
Pral3965g00017 256 Gene3D - 2 108 IPR012677 -
Pral3965g00017 256 MobiDBLite consensus disorder prediction 187 256 - -
Pral3965g00017 256 SMART rrm1_1 8 78 IPR000504 GO:0003723
Pral3965g00017 256 SMART rrm1_1 111 180 IPR000504 GO:0003723
Pral3965g00017 256 Gene3D - 109 187 IPR012677 -
Pral3965g00017 256 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 248 - -
Pral3965g00017 256 SUPERFAMILY RNA-binding domain, RBD 6 180 IPR035979 GO:0003676
Pral3965g00017 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Pral3965g00017 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Pral3965g00017 256 MobiDBLite consensus disorder prediction 218 256 - -
Pral3965g00017 256 FunFam serine/arginine-rich splicing factor SR34A-like 2 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3965g00017 Pral-Chr3965 56318 61166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3965g00017 9 172 Eukaryotic Initiation Factors Gene Family AT4G34110 24.852 1.26e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3965g00017 K12890 - gmx:100800653 345.895