Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3965g00003 ATGGGCGAGGTCGTGTTGAGTTCTGAGAAGCTTCTGGAAGCGAAGGAGGTTGAGACCGAGACCCATAAGCAGAAGGGGACGGCGGATGAGGAAGTGAGTGGAACAGAGAGTAAAGATGAGGAATTGAATAACGGATTGATGAGGTGGAGGAAGTTCCTGCCCAGGATGACATTGAGGGTGTTATTGGTTGAAGCTGATGATTCTACACGGCAGATTATAGCTGCGCTTCTTAGGAAATGCAGCTACAGAGTGGTTGTTGTGCCTGATGGCCTGAAGGCATGGGAGATACTGAAGGGAAGACCACACAATGTTGACCTTATACTAACAGAAGTGGATTTGCCATCAATATCTGGTTATGCTCTTCTCACATTGATTATGGAGCATGAAGTTTGCAAAAACATTCCAGTTATAATGATGTCTTCGCAAGATTCAATCAACACAGTCTACAAATGCATGTTGAGAGGTGCTGCTGACTACCTTGTCAAGCCCCTTAGAAAGAATGAGCTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCTTCAACCTCTGGTTTAAACGGTCTTGAAGACGAGAGTGTTGCACAAACGAAGGCTGAAGCCACTGCTGAAAACAATGCTCCAGATAATCATTCAAGTGGCGATGCTGCATGCATTCAAAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCTCAGAGCTCTTGTGCAAAGCCTGATTTGGAAGCTGAGAGTTCTCCGATGGATCATGTGTATGAATCTTCCCGACTAAAACAGGTCGAACCATACCCAAGAGAAACAAATATGCAGGACGTTGAAATGTGCATTCAAGTAGGCCAGGCCTTGGCTTTGCATGACAATCACGCAGAAGGATTAACAGTCGAGATCCGCAAGCGTGGTGAGACTAATTCAGCTTATGGCAAGGATGGTGACCAAGAACATTTTAGGAGTCCTGACACCAGTCAGGAGGCTTATGACAATCACAATGTTCAAATTACCTCTTCAAAGGAAGCTATTGACTTGATTGGAGCATTTCGAAATCATCTAAACAGCAGTCACAAAAGTTCCTCAGTCAACTGCACGGGCAAGTTTGACTTTTCTCCTCAGCTTGATCTTTCCTTAAGAAGATCTCATCCAGGCAGCTTTGAGAATGAAACTACTAAAGAAAGGCATGCCCTGATGCATTCCAATAGCTCAGCTTTCAGACGGTATACTAACAGGCAAACACAGGCCCCGCCTGCAGTGTCCATAAACTGCTGCAATCAAGAAAGAGAAAAGAGAACAAATTGTGGGAACAACATCTCAAACATGGCAGGCTATAACTTGGATATTTCAATGCCTAACTTTCAAGGAAGTATTGTGTCTTCAGCCACACAGCAGTCAAAAGAATCCGAGCTCCCAACTTCACCCTCCCAGCGTCGGCTTTCACTTCCAATCCCAGTAAAAGCTGTAAGGTACGATGATCCATGCGCGACCTATGGTTCTGCACTTCCTCCTATGTTCTGTACGCAGTCAGGGCCCGCATCCACACTAAATCCAGAGTTGGTGCCACACCGTGAACCAACCTTTCAAGTGAATGGTTTTTATCAGTCGAATACCAAAGAAGAAAGTTCAGAGCAGCGTTATGATCCTCAAGGTAAAAATGGAAGCAACACAACAGGCCACGTTGTATACATGCAGGAAAGCAATTTGGAACATGTGGAGGATCAAAGACACATCTCTCCCACAACTGGTCAAAGTGCCTGCACTAACAGCAACGCCGATCAGGTTGCCATGGCCAGGGCAGCTTCAGAGAGCATGACGGAAGAGCTCTCAAACAATGGGAGTTCTCATCGATCTAGATTAAGAGAAGCAGCTCTGAACAAATTCCGCTTGAAACGGAAAGAGAGATGCTTTGAAAAGAAGGTTCGATATGAAAGCAGAAAGAAACTTGCAGAGCAGCGTCCTAGAGTGAAGGGCCAATTTGTTCGTAAAGCGCAGCAATATTCTCAGGCTACAGAAAAAGATGGTTGA 2013 0.4501 MGEVVLSSEKLLEAKEVETETHKQKGTADEEVSGTESKDEELNNGLMRWRKFLPRMTLRVLLVEADDSTRQIIAALLRKCSYRVVVVPDGLKAWEILKGRPHNVDLILTEVDLPSISGYALLTLIMEHEVCKNIPVIMMSSQDSINTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTSGLNGLEDESVAQTKAEATAENNAPDNHSSGDAACIQRNKELIEKGSDAQSSCAKPDLEAESSPMDHVYESSRLKQVEPYPRETNMQDVEMCIQVGQALALHDNHAEGLTVEIRKRGETNSAYGKDGDQEHFRSPDTSQEAYDNHNVQITSSKEAIDLIGAFRNHLNSSHKSSSVNCTGKFDFSPQLDLSLRRSHPGSFENETTKERHALMHSNSSAFRRYTNRQTQAPPAVSINCCNQEREKRTNCGNNISNMAGYNLDISMPNFQGSIVSSATQQSKESELPTSPSQRRLSLPIPVKAVRYDDPCATYGSALPPMFCTQSGPASTLNPELVPHREPTFQVNGFYQSNTKEESSEQRYDPQGKNGSNTTGHVVYMQESNLEHVEDQRHISPTTGQSACTNSNADQVAMARAASESMTEELSNNGSSHRSRLREAALNKFRLKRKERCFEKKVRYESRKKLAEQRPRVKGQFVRKAQQYSQATEKDG 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3965g00003 670 MobiDBLite consensus disorder prediction 641 670 - -
Pral3965g00003 670 MobiDBLite consensus disorder prediction 301 321 - -
Pral3965g00003 670 Pfam Response regulator receiver domain 60 171 IPR001789 GO:0000160
Pral3965g00003 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 58 335 IPR045279 GO:0009736
Pral3965g00003 670 MobiDBLite consensus disorder prediction 198 215 - -
Pral3965g00003 670 Gene3D - 56 297 - -
Pral3965g00003 670 MobiDBLite consensus disorder prediction 229 248 - -
Pral3965g00003 670 MobiDBLite consensus disorder prediction 14 40 - -
Pral3965g00003 670 ProSiteProfiles CCT domain profile. 616 658 IPR010402 GO:0005515
Pral3965g00003 670 SMART REC_2 58 173 IPR001789 GO:0000160
Pral3965g00003 670 MobiDBLite consensus disorder prediction 301 322 - -
Pral3965g00003 670 MobiDBLite consensus disorder prediction 184 215 - -
Pral3965g00003 670 CDD psREC_PRR 60 163 - -
Pral3965g00003 670 MobiDBLite consensus disorder prediction 599 614 - -
Pral3965g00003 670 Pfam CCT motif 616 658 IPR010402 GO:0005515
Pral3965g00003 670 MobiDBLite consensus disorder prediction 533 554 - -
Pral3965g00003 670 SUPERFAMILY CheY-like 58 189 IPR011006 -
Pral3965g00003 670 ProSiteProfiles Response regulatory domain profile. 59 177 IPR001789 GO:0000160
Pral3965g00003 670 MobiDBLite consensus disorder prediction 454 473 - -
Pral3965g00003 670 MobiDBLite consensus disorder prediction 595 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3965g00003 Pral-Chr3965 22704 27143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3965g00003 337 660 Response Regulator Gene Family AT5G24470 32.121 5.30e-30 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pral3965g00003 Response_reg 1.9e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3965g00003 K12130 - gmx:100777119 809.29