Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3962g00082 ATGGAGCAGAACGACGTGATTGCGCCGTTCGTCATGAAGACGTACCACATAGTCAACGATCCCAGGACCGATGATCTCGTCGCTTGGGGGCCAGCCAATAATAGCTTCATCGTCGTCGACCCTTTGGATTTCTCCCGCAGGATCTTACCAGCGTATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGTCAGCTCAATACCTATGGTTTCAAAAAGGTGGATCCAGATCGATGGGAGTTTGCGAACGAGTGGTTCCTTCGCGGGCAGAAGCAGCTGTTGGTGAACATAGTGAGGAAGAAGCAGCACAAGAATAAGAATATTATGTGTTATCATGAGGGTTTGGAGGGGAAGCTGATGGAGGAAGTGGATGAAGAAGTGTTGGTGATGGAGATAGCGAGGTTGAAGGAGGAGCAGAAGGCGCTGGACAAGGAGGTGGAAGGGATGAATAAGAGGTTGGAGGCAACGGAGAGACGACCTCAGAAAATGATGGCGTTTCTGTGCAACGTGGTGGAGGACCCTGATGCTCTATCCCGCGTATTGGCCAAGAGAGAAGGAAGACAGTTGGCGGAGAAGAGGCGGCGCCTGATATCATCGGCCGCCGCTGCCACCACCTCGTCCTCGTCTTCGTCTGGCATGGCTGTCAAAACAAAGGTGGAAGAAGACGAGGCAACTGTGGTGGGAGGTATTATGCCTTGGTCGCCGGAGACTACTGGTTTCGAAACTCGTAATTTTTGTCAATCTTCTCCGCCGCAGGAATCATCACCGTATTGGTGGGGCAAAAGCCAGGCAACACTTGACACACCTCCTCGGAGTCAACAGAGTAATAGCGACACCACCGTTTCCACGGCGGTGGGAACCGTATGGCCGCCTCTAGGAGGGACGTATTCGGAATGTCACGCCGGTGACGGTCAATTATTGACATGTTTTACAGATATGGCGCCGGATACCCAGAGCAAACCGAGGCCGCCGCCGCCGCCTTATCCATTTTCGCTGTTGGAGTGGGGCTTTTAG 1011 0.5282 MEQNDVIAPFVMKTYHIVNDPRTDDLVAWGPANNSFIVVDPLDFSRRILPAYFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEWFLRGQKQLLVNIVRKKQHKNKNIMCYHEGLEGKLMEEVDEEVLVMEIARLKEEQKALDKEVEGMNKRLEATERRPQKMMAFLCNVVEDPDALSRVLAKREGRQLAEKRRRLISSAAAATTSSSSSSGMAVKTKVEEDEATVVGGIMPWSPETTGFETRNFCQSSPPQESSPYWWGKSQATLDTPPRSQQSNSDTTVSTAVGTVWPPLGGTYSECHAGDGQLLTCFTDMAPDTQSKPRPPPPPYPFSLLEWGF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3962g00082 336 Coils Coil 124 158 - -
Pral3962g00082 336 MobiDBLite consensus disorder prediction 198 218 - -
Pral3962g00082 336 Gene3D - 2 100 IPR036388 -
Pral3962g00082 336 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3962g00082 336 MobiDBLite consensus disorder prediction 198 214 - -
Pral3962g00082 336 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3962g00082 336 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3962g00082 336 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3962g00082 336 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3962g00082 336 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Pral3962g00082 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 234 IPR027725 -
Pral3962g00082 336 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3962g00082 336 MobiDBLite consensus disorder prediction 238 282 - -
Pral3962g00082 336 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3962g00082 Pral-Chr3962 595993 597376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3962g00082 6 203 HSF AT3G24520 58.911 1.08e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral3962g00082 HSF_DNA-bind 2.6e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3962g00082 K09419 - jre:108979361 323.939