Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3962g00075 ATGTCAACTTCGCCGTCTCCCGGAGCTTCTCCGGCCCCCACCTCGCCGCCGTCCACTAACACAACTTCTCCTCCTCCGCCTACTACTAACACAACATCTCCTCCTCCGCCCTCGGCCACCCCTCCTGCAACACCTCCTGCTACTCCCTCCACTCCACCACAGGTTACTCCTTCGCCCCCGCCGCCAGCCACACCCACTCCCAGCCCTCCCTTTCCCTCCCCACCTGCAACCTCGCCACCGCCGCCTACGTCTGGTACCAATTCTCCACCACCTCCGGTGACTCGCAGCTCGCCTCCTCCTCCTCCTCCTCCGTCCAGTTCAACCACGCCTTCGTCCCCTTCTTCATCGCCGGATATATCAACTGGTGTTATTGTTGGCATCGCCGTTGGTGCTGTGGGGATTCTTGTAATTTTAAGCCTTGTTTGCGTATGTTGTCGGAGGAAGAAGAGGAGAACAAGTAATGTAGGATCCTATGTGCCGCCACAGGGACCTAAAGGTGACCAATATGGTGGCCTACCACGTCAGTGGCAGCATAATGCTCCGTCTCCTTCAGATAATATTGTCTCCGTGATGCAAAAGCCCCCGCCCCCGGCTTATGCCCCTAAACCTCCTCCGCCGCCGCCATTTCTCGGCAGCAGTGGTGGGTCAGGTTCCAACTATACAGGTGGCGAAAATTCACACCCACCTCCTTCTCCTGGAATGTCATTGGGTTTCTCAAAGAGCGCATTTTCATATGAAGAGTTGGTACGGGCAACAGATGGGTTCTCCGATGCCAACCTCCTTGGACAAGGTGGATTTGGATATGTGCACAAGGGAATCCTGCCGAATGGGAAGGAGGTGGCAATCAAGCAGCTAAAGGCAGGAAGTGGGCAGGGTGAACGAGAATTTCAAGCAGAAGTTGAGATCATTAGCCGAGTTCATCACAGACATCTTGTTTCTCTCGTTGGGTACTGCATTACTGGACACCAGAGATTGCTTGTTTATGAATTTGTTCCAAACAATACGTTGGAGCTTCACTTACATGGAAAAGGGCGACCTACTATGGATTGGCCCACAAGACTGAAAATTGCATTAGGATCAGCAAAAGGACTGGCGTATCTCCATGAGGATTGTCATCCCAAGATCATCCATCGTGATATCAAAAGTGCTAACATACTTCTGGATTTCAAGTTTGAAGCGAAGGTTGCTGATTTTGGACTAGCAAAGTTTTCTTCTGATCTCAATACTCATGTTTCCACTCGAGTGATGGGAACTTTTGGTTATCTGGCTCCAGAATATGCTTCCAGTGGGAAACTCACAGACAAATCAGATGTTTTCTCCTTTGGGGTGATGCTCCTGGAGCTAATTACTGGACGTCGACCGGTTGACACAACTCATACTTTCATGGAGGATAGTCTGGTAGAGTGGGCAAGGCCTTTGCTTATCCGTGCTTTGGAAGAGCATGATTTTGATTCTCTGGTTGATCCAAGGCTGAAAGATGAATATGACCTCAATGAAATGACTCGCATGGTCGCATGTGCTGCAGCCTGCACCCGTCATTCAGCACGTCATAGGCCAAAAGTGAGCCAGGTTGCTCGTGCTCTGGAAGGAGACATGTCTCTATCAGATCTGAACGAAGGAATTAAACCCGGACACAGCTCTGCCTACAGTTTCCGAGGAAGCTCTGATTATGATACTGCACAATACAAGGAAGACATGAAAAAATTCAGGAAAATGGCTTTGGGAACCCAGGAGCTTGGCGTCAGCAGTGAATACAGTGCACCTACGAGTGACAACAGCTTATACCCATCTGGCTCAAGCAGCGAAGGCCAGAGCCGCGGGACCACCCGGGAAATGGAAATGAGAAAGATGAATAACCACCAAGGTTACAGTGGAAGCTCTTGA 1884 0.5069 MSTSPSPGASPAPTSPPSTNTTSPPPPTTNTTSPPPPSATPPATPPATPSTPPQVTPSPPPPATPTPSPPFPSPPATSPPPPTSGTNSPPPPVTRSSPPPPPPPSSSTTPSSPSSSPDISTGVIVGIAVGAVGILVILSLVCVCCRRKKRRTSNVGSYVPPQGPKGDQYGGLPRQWQHNAPSPSDNIVSVMQKPPPPAYAPKPPPPPPFLGSSGGSGSNYTGGENSHPPPSPGMSLGFSKSAFSYEELVRATDGFSDANLLGQGGFGYVHKGILPNGKEVAIKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGHQRLLVYEFVPNNTLELHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDLNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDTTHTFMEDSLVEWARPLLIRALEEHDFDSLVDPRLKDEYDLNEMTRMVACAAACTRHSARHRPKVSQVARALEGDMSLSDLNEGIKPGHSSAYSFRGSSDYDTAQYKEDMKKFRKMALGTQELGVSSEYSAPTSDNSLYPSGSSSEGQSRGTTREMEMRKMNNHQGYSGSS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3962g00075 627 MobiDBLite consensus disorder prediction 1 118 - -
Pral3962g00075 627 Gene3D Phosphorylase Kinase; domain 1 233 330 - -
Pral3962g00075 627 ProSiteProfiles Protein kinase domain profile. 255 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3962g00075 627 MobiDBLite consensus disorder prediction 9 110 - -
Pral3962g00075 627 MobiDBLite consensus disorder prediction 581 607 - -
Pral3962g00075 627 MobiDBLite consensus disorder prediction 581 627 - -
Pral3962g00075 627 FunFam proline-rich receptor-like protein kinase PERK1 233 330 - -
Pral3962g00075 627 SUPERFAMILY Protein kinase-like (PK-like) 228 528 IPR011009 -
Pral3962g00075 627 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 133 588 IPR047117 -
Pral3962g00075 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672|GO:0006468
Pral3962g00075 627 SMART serkin_6 255 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3962g00075 627 MobiDBLite consensus disorder prediction 175 189 - -
Pral3962g00075 627 ProSitePatterns Protein kinases ATP-binding region signature. 261 283 IPR017441 GO:0005524
Pral3962g00075 627 MobiDBLite consensus disorder prediction 194 211 - -
Pral3962g00075 627 MobiDBLite consensus disorder prediction 152 235 - -
Pral3962g00075 627 MobiDBLite consensus disorder prediction 212 228 - -
Pral3962g00075 627 FunFam Proline-rich receptor-like protein kinase PERK1 331 539 - -
Pral3962g00075 627 Pfam Protein tyrosine and serine/threonine kinase 260 527 IPR001245 GO:0004672|GO:0006468
Pral3962g00075 627 Gene3D Transferase(Phosphotransferase) domain 1 331 539 - -
Pral3962g00075 627 PRINTS Proline rich extensin signature 54 79 - -
Pral3962g00075 627 PRINTS Proline rich extensin signature 11 27 - -
Pral3962g00075 627 PRINTS Proline rich extensin signature 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3962g00075 Pral-Chr3962 534549 538830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3962g00075 96 610 Trihelix Transcription Factor Family AT1G70460 50.965 2.48e-167 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pral3962g00075 PK_Tyr_Ser-Thr 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3962g00075 - - gmx:100781944 785.408