Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3962g00055 ATGTTAGAAGGAGAAAAGCAAGGGGAATTTGAGATGGGCAATGGCATGTCTAATTGTGTTTCATTTCCCACGGAGCCAAGCCATAGCGACTGTTGGTTCTACAGGAAAGGGGCTTTTCGGAGAGAATTCCCCCCCCCCCCATTAATATACTGCGAATGTTTTGCATCAGGAATATACTGTGAGGGGTGCAACTGTGTAAATTGTTTTAACAATGTTGAGAATGATGCGGTGAGACGGGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCTAATGCATTTAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTAATAGCAGGGAGGAGACTGGAGAAGTTTTACTATTGGGAAAGCACAACAAGGGCTGCCACTGTAAAAAGTCGGGATGCCTCAAGAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGCTCCGAAAATTGCAAATGCTTGGACTGCAAAAATTTTGAGGGAAGTGAAGAAAGACAAGCTTTATTCCATGGAGATCAAAATAACAATATAGCATATATGCAGCAGGCAGCAAATGCTGCCATAACTGGGGCTATCGGATCCTCTGGTTATTCATCCCCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAGCACTTTTTTGGGCCAACAGTCAAGGACTCATCTGTTGGCAGACTTGGGCAGTTTCAACAGGCAAACAATGCCGGAGTTCCTGAACCTTCCTCTTCCTTATCCCCTCTCCCTGGTGCTCGGGTTGGGAGTGCTGCAGCAGGTCCTTCAAAATTTGCATACAGGTCTCTTTTAGCAGACATAATACAGCCTCAACACTTGAAGGAACTTTGCTCTATTCTGGTGCTAGTGTCAGGACAAGCCGCGAAGACACTCTCAGGACCAGATCAGAAAAATTTAGTTGACAAGCAGCGAATTGAAAATCAGACGGAGAGTGCCCTTGCTTCATCAACTCAACAGCAATTACCTAATCGAGTGGAAACTGACGTCGAGAAAACCATGGCTAATGATTGTTTGAGTGCAAACCAGACGGATAAAATCGGCGGCCAAGGTGATTCCAGTTCAGATGGTGCTCATGTCTCAAAGGGGAGGCCAATGTCTCCTGGAACTCTAGCCTTGATGTGCGATGAGCAAGATGCAATGTTCATGACAGCTCCCCCTCCTAGTGGTTTGATTGCCCATGCCGACAACACATCTTCACAGTCTGGTTGTGGACAAGGCATGACAGAGGCCCATGCAGAGCAAGAAAGGGCTGTATTGACAAAGTTCAGAGATTTTCTAAATAGGGTTATCACCATGGGAGAAATAAATGAGACAAAGTGTTCTTCATTAGCTAGAAGTGTATGGGAGACTCAAAAGGAGACAGTCAGCAATAATGTCGGAAATACAAGTACTAAGACAACACATCAGCAGGTTGTCACTAGTAATGGTGTTGCCAAAGCTGCGGTCCCACCCATGGCCGCAAGTATGAACATAATCACTTCAACGGCTTTAATTCCTAATAATGTGATTCCTGAAAATGGGGAAAGTAAGCCAAAGATCGAAAAGGAGGTATGA 1557 0.4522 MLEGEKQGEFEMGNGMSNCVSFPTEPSHSDCWFYRKGAFRREFPPPPLIYCECFASGIYCEGCNCVNCFNNVENDAVRREAVEATLERNPNAFRPKIASSPHGTRNSREETGEVLLLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFEGSEERQALFHGDQNNNIAYMQQAANAAITGAIGSSGYSSPPVSKKRKGQEHFFGPTVKDSSVGRLGQFQQANNAGVPEPSSSLSPLPGARVGSAAAGPSKFAYRSLLADIIQPQHLKELCSILVLVSGQAAKTLSGPDQKNLVDKQRIENQTESALASSTQQQLPNRVETDVEKTMANDCLSANQTDKIGGQGDSSSDGAHVSKGRPMSPGTLALMCDEQDAMFMTAPPPSGLIAHADNTSSQSGCGQGMTEAHAEQERAVLTKFRDFLNRVITMGEINETKCSSLARSVWETQKETVSNNVGNTSTKTTHQQVVTSNGVAKAAVPPMAASMNIITSTALIPNNVIPENGESKPKIEKEV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3962g00055 518 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 122 156 IPR005172 -
Pral3962g00055 518 PANTHER TESMIN/TSO1-RELATED 50 436 IPR028307 -
Pral3962g00055 518 ProSiteProfiles CRC domain profile. 39 159 IPR005172 -
Pral3962g00055 518 MobiDBLite consensus disorder prediction 196 249 - -
Pral3962g00055 518 MobiDBLite consensus disorder prediction 341 357 - -
Pral3962g00055 518 MobiDBLite consensus disorder prediction 220 238 - -
Pral3962g00055 518 SMART CXC_2 50 74 IPR033467 -
Pral3962g00055 518 SMART CXC_2 119 160 IPR033467 -
Pral3962g00055 518 MobiDBLite consensus disorder prediction 341 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3962g00055 Pral-Chr3962 467590 474380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3962g00055 49 485 CPP Transcription Factor Family AT4G29000 59.459 9.84e-169 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pral3962g00055 TCR 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3962g00055 - - qsa:O6P43_007909 684.1