Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3962g00054 ATGAAAGACTCTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCAAGATGCTTAAAGTTATACTGCGAATGTTTTGCATCAGGAATATACTGTGAGGGGTGCAACTGTGTAAATTGTTTTAACAATGTTGAGAATGATGCGGTGAGACGGGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCTAATGCATTTAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTAATAGCAGGGAGGAGACTGGAGAAGTTTTACTATTGGGAAAGCACAACAAGGGCTGCCACTGTAAAAAGTCGGGATGCCTCAAGAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGCTCCGAAAATTGCAAATGCTTGGACTGCAAAAATTTTGAGGGAAGTGAAGAAAGACAAGCTTTATTCCATGGAGATCAAAATAACAATATAGCATATATGCAGCAGGCAGCAAATGCTGCCATAACTGGGGCTATCGGATCCTCTGGTTATTCATCCCCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAGCACTTTTTTGGGCCAACAGTCAAGGACTCATCTGTTGGCAGACTTGGGCAGTTTCAACAGGCAAACAATGCCGGAGTTCCTGAACCTTCCTCTTCCTTATCCCCTCTCCCTGGTGCTCGGGTTGGGAGTGCTGCAGCAGGTCCTTCAAAATTTGCATACAGGTCTCTTTTAGCAGACATAATACAGCCTCAACACTTGAAGGAACTTTGCTCTATTCTGGTGCTAGTGTCAGGACAAGCCGCGAAGACACTCTCAGGACCAGATCAGAAAAATTTAGTTGACAAGCAGCGAATTGAAAATCAGACGGAGAGTGCCCTTGCTTCATCAACTCAACAGCAATTACCTAATCGAGTGGAAACTGACGTCGAGAAAACCATGGCTAATGATTGTTTGAGTGCAAACCAGACGGATAAAATCGGCGGCCAAGGTGATTCCAGTTCAGATGGTGCTCATGTCTCAAAGGGGAGGCCAATGTCTCCTGGAACTCTAGCCTTGATGTGCGATGAGCAAGATGCAATGTTCATGACAGCTCCCCCTCCTAGTGGTTTGATTGCCCATGCCGACAACACATCTTCACAGTCTGGTTGTGGACAAGGCATGACAGAGGCCCATGCAGAGCAAGAAAGGGCTGTATTGACAAAGTTCAGAGATTTTCTAAATAGGGTTATCACCATGGGAGAAATAAATGAGACAAAGTGTTCTTCATTAGCTAGAAGTGTATGGGAGACTCAAAAGGAGACAGTCAGCAATAATGTCGGAAATACAAGTACTAAGACAACACATCAGCAGGTTGTCACTAGTAATGGTGTTGCCAAAGCTGCGGTCCCACCCATGGCCGCAAGTATGAACATAATCACTTCAACGGCTTTAATTCCTAATAATGTGATTCCTGAAAATGGGGAAAGTAAGCCAAAGATCGAAAAGGAGGTATGA 1476 0.4451 MKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCEGCNCVNCFNNVENDAVRREAVEATLERNPNAFRPKIASSPHGTRNSREETGEVLLLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFEGSEERQALFHGDQNNNIAYMQQAANAAITGAIGSSGYSSPPVSKKRKGQEHFFGPTVKDSSVGRLGQFQQANNAGVPEPSSSLSPLPGARVGSAAAGPSKFAYRSLLADIIQPQHLKELCSILVLVSGQAAKTLSGPDQKNLVDKQRIENQTESALASSTQQQLPNRVETDVEKTMANDCLSANQTDKIGGQGDSSSDGAHVSKGRPMSPGTLALMCDEQDAMFMTAPPPSGLIAHADNTSSQSGCGQGMTEAHAEQERAVLTKFRDFLNRVITMGEINETKCSSLARSVWETQKETVSNNVGNTSTKTTHQQVVTSNGVAKAAVPPMAASMNIITSTALIPNNVIPENGESKPKIEKEV 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3962g00054 491 SMART CXC_2 92 133 IPR033467 -
Pral3962g00054 491 SMART CXC_2 7 47 IPR033467 -
Pral3962g00054 491 PANTHER TESMIN/TSO1-RELATED 2 409 IPR028307 -
Pral3962g00054 491 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 9 44 IPR005172 -
Pral3962g00054 491 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 95 129 IPR005172 -
Pral3962g00054 491 MobiDBLite consensus disorder prediction 193 211 - -
Pral3962g00054 491 ProSiteProfiles CRC domain profile. 8 132 IPR005172 -
Pral3962g00054 491 MobiDBLite consensus disorder prediction 314 338 - -
Pral3962g00054 491 MobiDBLite consensus disorder prediction 169 222 - -
Pral3962g00054 491 MobiDBLite consensus disorder prediction 314 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3962g00054 Pral-Chr3962 466400 474380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3962g00054 2 453 CPP Transcription Factor Family AT4G29000 61.002 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pral3962g00054 TCR 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3962g00054 - - qsa:O6P43_007909 728.783