Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3962g00047 ATGATCACCGCCACCACTTCTTCTCAGATCCTTCGACACACCACCAGCTTCCTCTCCGAGGTCCTTTCGCATTCTGAACTCCGACGCCGCCTCATTTCCACCCTCCTTCGCCGCTCTTCAATCTCCAACCAAATCACCCTCAAACACCTCAATCTCGCGGCTGACACTCTCGATAATGCTATATCTGTCTCCAGCCTCACCATCCGATCCTCCTCCCTCACCCTCGCTGAGAAGCTTCTCCTCCCTCTGCCTCAGAATCCCATTTCGTCTTTCCTTCTCTCTCTCATATACACGATCAACAAACGACAAGTCGAAGCCGCCTTAAGTCTCCTTCAAGTCTTCTATTTAAACCCTTCGTTGGCCCGCTCGGAAATCGCTCCTGTTCTCTACGAGCAGCTGTTTTCTCTCCACCTCCTCCCAGTTTTCCGATCCTTCGATGAACAGAGAGCAAAAATACTGCCATCAACATCAGAAAATTCAGCACGCTATCCAGATGGTTATTCAATTTTGGACGAATCTGTTGTCTTACCCCCTACAAAATTGTTATCGCGAATGACCAACGATCAAGCCTCGAAGCTGAGGGAATTAGAGAGAGACTACGAAGAGACTATTGATGACAATTGCAGGATTGTTGCCGAGTACTTCAAAGAAGTTTTGGTGAGTAACACTAGCGACTCATCAGTCAGTCTGCCACTGTCGGTTCTGAAGAACAGCGGAGATGATGCAGAGATGAAGCAGAGCCAACAGGAGATGGTGCAAACAGATATACCTTTGTTTAAGAACGGACGGTATAATCCAATTTGGACCGAAACAGAGACGTCTATTGAATTTTCGAGTAGCAGTTTCAGCGCCAAGTGCTTGAATGCACCGTTTTACCCTCAAAGAGTCTCTCCCAAAATCCTCAAACACCAAGAATCTTCTAAAGAACTGTCCGTAACATCCCGTTCAGACATGGACGCTGAAACTGAGTCTTCCGAGGACGAAAATATGCCTCGTTATTCGTCAGAATTTGAGGCAGAAACTAAGGAAAAAGACACGGTGGTACCGCTGGAGCCTCGACGAAGCCAAATCCAAGAATCCATGCAAATTAATTTTGCAGAACCCGGAGGTTCCCCAGACTACATCATGGCAGATTATGATCACCAGCCCCCTGGAAATGGAAAATGTACGCCTCCCAAGGACTTTGTCTGCCCAATAACTAGCAATCTATTTGATGATCCAGTAACTCTTGAGACAGGACAGACATATGAACGAAAAGCGATCGAAGAATGGTTCAACTGGGGGAACTCAACCTGTCCAATCACCCGCCAGAAGCTGCAAAATACCCAGCTGCCTAAAACAAATTATGTGCTCAAACGACTAATTGCAGGCTGGAAAGAACAGAATCCCAATTCAATCCCATCTCCATCTCCATCTGAGAGTCTGCATGCTGAAGCTGAAGTAGCAATAAAGTCAGCAACGCCTTCAACTTCTCCTAGTAGTGTTATAACCCAAGCCAATGTTGATGGGATGATTAGTGAGTTGCGACATGCAATTAACAACCTGTATCTGTCAGAGATCCTCGAGGAGTCTGAAATGGCTGTGCTTCAAATTGAGCAATGTTGGAAAGAAGCAAACCTGGGAGTGGATATCCAAAGCATGTTATCGAAACCTCCAATCATTAATGGGTTCATGGAGATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCAAGCAACAGTTTTTCTTCTGGCCGAGATGGGTTCTAGGGACAATGCTGTTATTCAGACGCTTACCCGAGTGGACTCGGATGTAGAATGTATTATGGCTCTTTTCAAGAAAGGCTTGACAGAGGCTGTTGTATTGATATATCTCCTGAAGCCTTCTACTACGACTCTCGCGGAAATGGCCATATTGGAGTCTCTCATAACAGTATTCGATAAGAAAGAGGAAGACTTGCTTAAGATGTACATAAAGCCCAAGTCAGCTGCTGTACTTTTACTGGCACAGATTCTTGGAAATAATGAGGAGAGAATCGCATCATCAGTAGCCAAGACTTTGATAAACGGTAGAGTAATTGGATGTATAGTGGGCAGTTTTCGAGCTGAGTGGGCAGAGGAGAGGACTGCTGCGGTGGATATCTTATTAAGATGCATCCAGGAAGATGGAACTTGCAGGCATCTCATTGCTGAAAAAGTTGAGCCGTCTCCCATTCTGGAAAGCTTCACTGGGGCGAATGATGCAGAACGTTTTAAGACAATTCAATTTTTTTCTGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACTTTATAAAGGAAGAAGGTGCTTTCAGTACAATGCACACTTTCCTCGTTTATATGCAAACAGCCCTTCAAGATCACTGTCCAGTCGTAGCTGGCCTCTTACTCCAACTTGATCTTCTGGCAGAACCAAGAAAGATGAGCATATACCGTGAAGAGTCTTTAGATACTCTTATTTCATGCCTCAGAAACAGTGATTTCCCGGCTGTCCAAGTAGTAGCTGCTGAGACGATAGTGTCATTACAAGGGAGATTCAACTTCGCTGGAAAGTCTCTTACCAGAGAAGTCCTGCTCAAACGTGCTGGCTTTAACAGAAATTATAAGAATCTTGATCAGATTGATGATATCAGCCATATCAGTGGAGAACTTGAAACGAATCCAGAAGAAGAGAAGGCAACTGATGATTGGGAGAGAAAAATTGCGTCGGTTTTAGTTGGCCATGAGTTTGGCCTACTTTTTGAGGCTTTAGCTGAAGGCCTGAAAAGCCGAAGTACACAACTAAGTTCGGCATGCTTTGTATCAGCCACATGGCTTACATACATGCTTACCGTTCTACCAGATACAGGAATACGGGGAGCAGCCTGTGTCTGCATGCTCAAGCGCTTTGTATCTATATTAAAATCTGCTAAGGACACTGAAGATAGAATCCTTTCTATGCTTGCTCTAAATACCTTTCTTCAGTACCCTGATGGATTGCTTGATCTTGCTTCCTACACTAAGGATGTCCTAAAAGGTCTGAGAGAGCTGAAGAGATTCTCCCCTCTAGCGTCTGAAATGCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAGCTGGTATCTGGATGCATAAAGAGTTAATTCAGGTAGATTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATTTGTCATAAGGATAAAATTTTTTCAGGCCATTCAGATGGAACTATCAAGGTCTGGGCAGTAAGGGGGAGCTTATTCCATCTGATTCAAGAGACGCAAGAACACATGAAGGCGGTTTCAAGTTTGGCAATTTCAGAATCTGGTGACAGGCTATACAGTGGTTCGCTTGATCGATCTGTAAAGGTCTGGTCTATAGGAAAGTCAGTAATACAGTGTGTACAAGTGCATGATATGAAAGATCAGATTCATAATTTTGCTGTAGCCAATAGCAAATTCTGCTACATTCCTCAGGGAAATGGTGTTAAGGTTCAATCATTGAATGGAGAATCGAGGCTGTTAAACAGTAACAAATACGTCAGATGCTTGGTTGTTCTTCATAAGAGACTATACTGCGGATGCCACGACAACAGTATTCAGGAGATAGATTTGGAAACAGGAACAGTCAGTACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTTTATGCCCTGCAAATTCGTGGTGAACATATGTATGCAGCCAGTTCTTCCTTGGATGGAGCTGTTATAAAGATATGGAACACTTCCAGTTACAGTATGATTGGATCACTGGTAATTGCATCAGAAGTGAGGACGATGGCAATGAGCTCAGAGTTAATTTACTTGGGATGCAGGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAACAGGACAGAATTGATACAATACGGATTGGTACAAATGGCAAGATTGCTTGCATGGCTGTCGATGGAAATGAAGAAACCTTTGTCATTGGAACCTCTGATGGCCGAATTCAGGCATGGGGAATAAACTAA 4002 0.438 MITATTSSQILRHTTSFLSEVLSHSELRRRLISTLLRRSSISNQITLKHLNLAADTLDNAISVSSLTIRSSSLTLAEKLLLPLPQNPISSFLLSLIYTINKRQVEAALSLLQVFYLNPSLARSEIAPVLYEQLFSLHLLPVFRSFDEQRAKILPSTSENSARYPDGYSILDESVVLPPTKLLSRMTNDQASKLRELERDYEETIDDNCRIVAEYFKEVLVSNTSDSSVSLPLSVLKNSGDDAEMKQSQQEMVQTDIPLFKNGRYNPIWTETETSIEFSSSSFSAKCLNAPFYPQRVSPKILKHQESSKELSVTSRSDMDAETESSEDENMPRYSSEFEAETKEKDTVVPLEPRRSQIQESMQINFAEPGGSPDYIMADYDHQPPGNGKCTPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNWGNSTCPITRQKLQNTQLPKTNYVLKRLIAGWKEQNPNSIPSPSPSESLHAEAEVAIKSATPSTSPSSVITQANVDGMISELRHAINNLYLSEILEESEMAVLQIEQCWKEANLGVDIQSMLSKPPIINGFMEILFNSVDPQVLQATVFLLAEMGSRDNAVIQTLTRVDSDVECIMALFKKGLTEAVVLIYLLKPSTTTLAEMAILESLITVFDKKEEDLLKMYIKPKSAAVLLLAQILGNNEERIASSVAKTLINGRVIGCIVGSFRAEWAEERTAAVDILLRCIQEDGTCRHLIAEKVEPSPILESFTGANDAERFKTIQFFSELVKLNRRTFNEQILHFIKEEGAFSTMHTFLVYMQTALQDHCPVVAGLLLQLDLLAEPRKMSIYREESLDTLISCLRNSDFPAVQVVAAETIVSLQGRFNFAGKSLTREVLLKRAGFNRNYKNLDQIDDISHISGELETNPEEEKATDDWERKIASVLVGHEFGLLFEALAEGLKSRSTQLSSACFVSATWLTYMLTVLPDTGIRGAACVCMLKRFVSILKSAKDTEDRILSMLALNTFLQYPDGLLDLASYTKDVLKGLRELKRFSPLASEMLKVLVEENESKAGIWMHKELIQVDCSENGEVLSVICHKDKIFSGHSDGTIKVWAVRGSLFHLIQETQEHMKAVSSLAISESGDRLYSGSLDRSVKVWSIGKSVIQCVQVHDMKDQIHNFAVANSKFCYIPQGNGVKVQSLNGESRLLNSNKYVRCLVVLHKRLYCGCHDNSIQEIDLETGTVSTIQSGSKRLLGKANPVYALQIRGEHMYAASSSLDGAVIKIWNTSSYSMIGSLVIASEVRTMAMSSELIYLGCRGGAVEIWDRKKQDRIDTIRIGTNGKIACMAVDGNEETFVIGTSDGRIQAWGIN 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3962g00047 1333 Pfam U-box domain 392 462 IPR003613 GO:0004842|GO:0016567
Pral3962g00047 1333 SUPERFAMILY RING/U-box 388 468 - -
Pral3962g00047 1333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 468 IPR013083 -
Pral3962g00047 1333 MobiDBLite consensus disorder prediction 300 349 - -
Pral3962g00047 1333 CDD RING-Ubox_PUB 392 444 IPR045210 -
Pral3962g00047 1333 ProSiteProfiles U-box domain profile. 390 465 IPR003613 GO:0004842|GO:0016567
Pral3962g00047 1333 SUPERFAMILY ARM repeat 26 1013 IPR016024 -
Pral3962g00047 1333 SUPERFAMILY ARM repeat 552 846 IPR016024 -
Pral3962g00047 1333 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1332 - -
Pral3962g00047 1333 SUPERFAMILY WD40 repeat-like 1061 1332 IPR036322 GO:0005515
Pral3962g00047 1333 Gene3D - 1030 1333 IPR015943 GO:0005515
Pral3962g00047 1333 ProSiteProfiles Trp-Asp (WD) repeats profile. 1299 1333 IPR001680 GO:0005515
Pral3962g00047 1333 MobiDBLite consensus disorder prediction 301 349 - -
Pral3962g00047 1333 SMART Ubox_2 394 458 IPR003613 GO:0004842|GO:0016567
Pral3962g00047 1333 Pfam WD domain, G-beta repeat 1089 1122 IPR001680 GO:0005515
Pral3962g00047 1333 SMART WD40_4 1252 1288 IPR001680 GO:0005515
Pral3962g00047 1333 SMART WD40_4 1083 1122 IPR001680 GO:0005515
Pral3962g00047 1333 SMART WD40_4 1213 1249 IPR001680 GO:0005515
Pral3962g00047 1333 SMART WD40_4 1157 1200 IPR001680 GO:0005515
Pral3962g00047 1333 SMART WD40_4 1291 1331 IPR001680 GO:0005515
Pral3962g00047 1333 SMART WD40_4 1041 1078 IPR001680 GO:0005515
Pral3962g00047 1333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1090 1123 - -
Pral3962g00047 1333 ProSiteProfiles Trp-Asp (WD) repeats profile. 1090 1123 IPR001680 GO:0005515
Pral3962g00047 1333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1299 1333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3962g00047 Pral-Chr3962 422099 429460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3962g00047 378 517 U-box Gene Family AT5G42340 34.932 5.73e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3962g00047 - - pcin:129289069 2096.63