Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3962g00008 ATGGATAACGCGCTCGTTTCAGAAGCCAATAACCTGGCCACCTCCCCGCACCCACCTTCCACCTACTCCATCGATTTGGGCGCTTTCGACCTCGACGAGGCTCTCGCCTCATCAGCCGGTGATTCATGCCGCCGATTTGCCCACTCTAAGAGCTTCGTTGCCACATTGCCGGCCGTTCAGCACATGGACGGCGATGCTGTTTGCTCCGTTTGCATGCAAGGCTTTGACCAGCGCAGCAACCTCGACTCCGACGATGGAAACAAACAAATACAAATACCCTGCGGCCACGTGTACCACTCCGGCTGCATCGCCGCCTGGATCTCTCGCTCCAACTCCTGCCCCCTCTGCCGCTCTCATATCTTCCCTCCACTCTCATCAATTACCTACACAATGTCTTGA 399 0.5639 MDNALVSEANNLATSPHPPSTYSIDLGAFDLDEALASSAGDSCRRFAHSKSFVATLPAVQHMDGDAVCSVCMQGFDQRSNLDSDDGNKQIQIPCGHVYHSGCIAAWISRSNSCPLCRSHIFPPLSSITYTMS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3962g00008 132 ProSiteProfiles Zinc finger RING-type profile. 68 117 IPR001841 -
Pral3962g00008 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 126 IPR013083 -
Pral3962g00008 132 SMART ring_2 68 116 IPR001841 -
Pral3962g00008 132 SUPERFAMILY RING/U-box 61 124 - -
Pral3962g00008 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 118 - -
Pral3962g00008 132 Pfam Ring finger domain 68 117 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3962g00008 Pral-Chr3962 92382 92780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3962g00008 24 120 C3H Transcription Factor Family AT5G01980 40.385 6.01e-13 62.4