Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3960g00024 ATGGGAAGAGCCGCCCGGTGGTTGAAGAGCTTGTTTGGGATAAAGAAAGACAGAAACCATGTTTCAGAGGGAGAACTTAGAGACTTATGTCACAATCCAACCACCATACCACCAAACATCTCGCCTGCAGAAGCTGCTTGGCTTCAGTCGTTCTACACAGAAACAGATAAACAGCAGAACAAGCACGCCATTGCGGTGGCCGCGGCCACCGCAGCCGCCGCTGATGCCGCCGTAGCAGCCGCTCAGGCTGCAGTGGCCGTCGTTAGGCTTACCAGCCATGGCAGAGGCACCATGTTCGGCAGTGGTGGACACGAGATATGGGCTGCCGTTAAGATTCAAACAGTATTTAGGGGTTACTTGGCAAGAAAAGCACTGAGAGCTTTGAAAGGATTGGTGAAATTACAAGCACTCGTGAAAGGCTATTTAGTGAGGAAGCAGGCCACGGCAACCTTGCATAGTATGCAAGCTCTTATAAGAGCTCAAGCCACTGTGAGGTCTCAGAAAGCTCGCAGGCTCATGAACAGAGACAATGAAGCCTACAGATATGAAGCTCGAGCCCGAAGATCCATGGAGAGATTTGACGACACTAGGAGTGAGTACACAGCACCCATTCACAGCAGAAGGATGTCTTCTTCTTTTGATGCAACAATAAATAACTCTAACAGCTTCGACGGAAGCCCAAAAATATTGGAAGTGGACACTGGTAGGCCAAGATCGAAGTCTCGGAGGACCAACACTTCAATTTCAGATTTTGGCGATGACCAACAATTCCAGGCACTTTCCTCTCCTCTTCCAGCCCCTTGTTGTCGTACCCCAGTACGCCTATCGATACCGAACTGTCGCCGGAATCTGCAGGACACCGATTGGGGGTTGACGGCGGAAGAATGCAGGTCGTCTACGGCACAGAGCACACCTCGGTTCACCAATTCTTGTGGGTCGTTTAGTTGCAATGCGGCGGCGTGCGGGAGCGTTTGTGCCGGCGATGGCTTTTACCGACAATACGGGAATTGCCCGAATTACATGGCGAATACTCAGTCATTCAGGGCGAAATTGAGGTCCCACAGTGCTCCAAAGCAGAGGCCAGAGCCGAAGAGGAGGGTATCGTTGAACGAATTGATGGAGTGTAGGAGTAGTTTGAGCGGGGTTCGAATGCAGAGATCTTGCTCGCAGGTTCAGGAAGCCATTAGCTTCAAGAATGCAGTGATGGGTAAGCTCGAAAAGTCTGCAGAATTTGGGAGGGAAAGGGATAGCAATTACTGGCAGAGGAGGTGA 1272 0.5102 MGRAARWLKSLFGIKKDRNHVSEGELRDLCHNPTTIPPNISPAEAAWLQSFYTETDKQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGSGGHEIWAAVKIQTVFRGYLARKALRALKGLVKLQALVKGYLVRKQATATLHSMQALIRAQATVRSQKARRLMNRDNEAYRYEARARRSMERFDDTRSEYTAPIHSRRMSSSFDATINNSNSFDGSPKILEVDTGRPRSKSRRTNTSISDFGDDQQFQALSSPLPAPCCRTPVRLSIPNCRRNLQDTDWGLTAEECRSSTAQSTPRFTNSCGSFSCNAAACGSVCAGDGFYRQYGNCPNYMANTQSFRAKLRSHSAPKQRPEPKRRVSLNELMECRSSLSGVRMQRSCSQVQEAISFKNAVMGKLEKSAEFGRERDSNYWQRR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3960g00024 423 PANTHER IQ-DOMAIN 5-RELATED 1 371 - -
Pral3960g00024 423 MobiDBLite consensus disorder prediction 224 250 - -
Pral3960g00024 423 Gene3D - 57 131 - -
Pral3960g00024 423 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Pral3960g00024 423 ProSiteProfiles IQ motif profile. 108 133 IPR000048 GO:0005515
Pral3960g00024 423 Pfam Protein of unknown function (DUF4005) 297 381 IPR025064 -
Pral3960g00024 423 SMART iq_5 127 148 IPR000048 GO:0005515
Pral3960g00024 423 SMART iq_5 104 126 IPR000048 GO:0005515
Pral3960g00024 423 Pfam IQ calmodulin-binding motif 107 126 IPR000048 GO:0005515
Pral3960g00024 423 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Pral3960g00024 423 ProSiteProfiles IQ motif profile. 153 181 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3960g00024 Pral-Chr3960 175555 178686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3960g00024 1 384 IQD Protein Family AT3G16490 50.891 4.48e-97 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3960g00024 - - tcc:18588500 544.658