Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3960g00023 ATGCTCGTGAGAATGTCAAATCTGCATTATGGTTTCAATTTTTTGCTACTTCTTGTTCTTCTTCTGATGCAAAATCCGACTACGACTCTATGCCATACAAAGGGATTGCGGCCAAAGCGTTCTACTGTGACATCATCGACGACCAACATGACCCGAATCCAATTCTCAGAACAGCAATTCATGAAGTGGATAAAGTTTGTTGGTGGCCTCAGACACTCTGTTTTCGGGATAGCCAAAAACAAGCTTTTTCCCTCTCACACCCTGCATGTCTCCAAAAAGCCTTCTTCGGGACAATTTTCGACAATTCAACGCGCAATCGATTCTCTTCCATTCCTCAACCTTGTGAGAGTCGTGATAAAGGTCCACGCAGGGGTTTACACGGAGAAAGTGAACATTCCTCCTATGAAATCCTTCATAACCATACAAGGTGCTGGAGCTGACAAAACCATAGTTCAATGGGGAGACACAGCACAAACAAAAGGATCAGACGGGAAGCCAATGGGAACCTATGGATCAGCAACATTTGCTGTGAATGCACCTTATTTCATCGCCAAGAACATCACATTCAAAAATTCTGCCCCAATTCCAGCACCAGGAGCAGTAGGAAAGCAAGCAGTGGCATTAAGAATATCAGCAGACACAGCGACATTCCTGGGGTGTAAATTCTTAGGAGCACAAGACACATTGTATGATCATGTGGGAAGACATTACTATAAAGACTGCTACATCGAAGGCTCAGTAGATTTCATATTCGGGGACGCCCTGTCTCTGTTCGAGAGGTGTCACGTGCATGCAATAGCGCAGAACATAGGGGCGTTAACAGCACAGGGAAGGAACAGTATTTTGGAGGACACAGGGTTTTCGTTTGTGCACTGTAAGGTCACGGGTTCTGGGGCACTGTACCTAGGTAGGGCATGGGGTCCCTTCTCTCGCGTGGTCTTTGCTTACACCAATATGGACAATATCATCATTCCCAAAGGCTGGTACAACTGGGGTGACCCTAACCGGGAAATGACTGTGTTTTATGGACAATACAAATGCACGGGACCAGGAGCCAGATTTGCAGGCAGAGTATCTTGGTCAAGAGAGCTCACGGATGAGGAAGCTAAGCCTTTTATTTCACTTAGCTTCATTGACGGCTCTGAATGGATCAAATTGTAG 1161 0.4582 MLVRMSNLHYGFNFLLLLVLLLMQNPTTTLCHTKGLRPKRSTVTSSTTNMTRIQFSEQQFMKWIKFVGGLRHSVFGIAKNKLFPSHTLHVSKKPSSGQFSTIQRAIDSLPFLNLVRVVIKVHAGVYTEKVNIPPMKSFITIQGAGADKTIVQWGDTAQTKGSDGKPMGTYGSATFAVNAPYFIAKNITFKNSAPIPAPGAVGKQAVALRISADTATFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGDALSLFERCHVHAIAQNIGALTAQGRNSILEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTNMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGARFAGRVSWSRELTDEEAKPFISLSFIDGSEWIKL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3960g00023 386 ProSitePatterns Pectinesterase signature 2. 243 252 IPR033131 -
Pral3960g00023 386 SUPERFAMILY Pectin lyase-like 84 385 IPR011050 -
Pral3960g00023 386 Pfam Pectinesterase 93 380 IPR000070 GO:0030599|GO:0042545
Pral3960g00023 386 Gene3D - 84 386 IPR012334 -
Pral3960g00023 386 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 78 385 - -
Pral3960g00023 386 FunFam Pectinesterase 84 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3960g00023 Pral-Chr3960 171466 173696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3960g00023 5 384 Carbohydrate Esterase AT5G47500 42.782 2.64e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3960g00023 K01051 - qsa:O6P43_007857 660.218