Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3960g00014 ATGGGGAAGGCTTGGATGATCCTGGCTTTTGATCTCCTCCTCCTTCTCCACCTTAACCTTCATCTCGATGCAGCAAGAGCAGCCTTTGGCGTCGGCGGCGGCATTGGCGTTGGTGTAGGTGTTGGTGGCGGCGGCGGCGGGGGAGTAGTTTGGGTCGGCGGTGGCGGGAATGGCGGTTCTCCGGGGTCTTCTCCAGTGCCGAAGCAGGACAAAGCTTACATGGCTCTGCAGGCATGGAAAGCCGCGATAACGGAGGACCCATTGAGGATTCTGGAGAGTTGGAATGGTTCTAACGTGTGTTCTTACAAAGGGGTGTTTTGTGCCAATCCTGAGGATGCATCAGGTGGGCCTGTGGTCGCCGGAATAGATCTCAACCACGCGAATCTCAGAGGAAGTCTTGTGAAAGAGCTCTCTTTGCTCACTGAAATGTCTCTTCTTCACCTCAACAGCAATAGATTTACAGGTACAGTTCCTGATACTTTCAGAGACCTCTCGGCTCTTGAAGAGTTAGACCTCAGCAACAACCAGCTCTCTGGTCCTTTCCCCACGGTGACCTTGTCAATGCCCAGTCTGGTTTACTTGGACATCCGATTCAACTCTTTATCTGGACCACTCCCTGATGATGTTTTCAACAAGAATCTGGATGCCATTTTTCTCAACAACAATCAATTTGAAGGCGAAATCCCCCAAAATCTGGGCAATTCACCTGCTTCGGTCATAAATTTAGCAAACAACAAGTTCAGTGGGGACATCCCAGCGAGTTTTGGCTTCATGGGTTCTAAGCTAAAGGAGATTCTCTTCCTCAATAACCAGTTAACAGGGTGCATTCCTGAAGGGGTTGGGATCTTCACACAGATGCAAGTTCTGGATGTGAGCTACAATTCATTAATGGGTCATTTGCCAGATACAATATCTTGTTTGCAAGACATTGAAGTTCTCAATTTGGCGCACAACAAGCTTTCTGGAGAAGTATCGGACGTGATCTGCTCACTGAGGAACCTGTTGAATCTAACGGTTGCTTATAATTTCTTTTCTGGGTTCAGCCAGGGATGCTCAAGGCTTTCCGTTAGGAATGTGGGTTTTGATTTCTCAGATAATTGCATTCCTGGGAGGGACATGCAGAGACCTCAGCCAGAGTGTTCTGTGATCCCAGGCGGTGGCTTGAATTGTCTCAGAATCCCAACTCCGAAGCTTGTTTGTGGTTCGCTTGGTGTAAGTCTGTCTAAGCGCGATCATCCAACTCCATCTTCTTCTTCGCCTTGA 1263 0.4877 MGKAWMILAFDLLLLLHLNLHLDAARAAFGVGGGIGVGVGVGGGGGGGVVWVGGGGNGGSPGSSPVPKQDKAYMALQAWKAAITEDPLRILESWNGSNVCSYKGVFCANPEDASGGPVVAGIDLNHANLRGSLVKELSLLTEMSLLHLNSNRFTGTVPDTFRDLSALEELDLSNNQLSGPFPTVTLSMPSLVYLDIRFNSLSGPLPDDVFNKNLDAIFLNNNQFEGEIPQNLGNSPASVINLANNKFSGDIPASFGFMGSKLKEILFLNNQLTGCIPEGVGIFTQMQVLDVSYNSLMGHLPDTISCLQDIEVLNLAHNKLSGEVSDVICSLRNLLNLTVAYNFFSGFSQGCSRLSVRNVGFDFSDNCIPGRDMQRPQPECSVIPGGGLNCLRIPTPKLVCGSLGVSLSKRDHPTPSSSSP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3960g00014 420 PRINTS Leucine-rich repeat signature 167 180 - -
Pral3960g00014 420 PRINTS Leucine-rich repeat signature 307 320 - -
Pral3960g00014 420 SUPERFAMILY L domain-like 74 366 - -
Pral3960g00014 420 Gene3D Ribonuclease Inhibitor 69 238 IPR032675 -
Pral3960g00014 420 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 63 406 - -
Pral3960g00014 420 SMART LRR_typ_2 188 212 IPR003591 -
Pral3960g00014 420 SMART LRR_typ_2 283 307 IPR003591 -
Pral3960g00014 420 SMART LRR_typ_2 140 163 IPR003591 -
Pral3960g00014 420 SMART LRR_typ_2 164 187 IPR003591 -
Pral3960g00014 420 SMART LRR_typ_2 331 354 IPR003591 -
Pral3960g00014 420 Pfam Leucine rich repeat N-terminal domain 75 107 IPR013210 -
Pral3960g00014 420 Gene3D Ribonuclease Inhibitor 239 380 IPR032675 -
Pral3960g00014 420 FunFam Leucine-rich repeat receptor protein kinase EMS1 251 349 - -
Pral3960g00014 420 FunFam Leucine-rich repeat extensin-like protein 1 73 234 - -
Pral3960g00014 420 Pfam Leucine rich repeat 144 201 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3960g00014 Pral-Chr3960 108821 110629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3960g00014 67 404 Leucine-rich Repeat extension Gene Families AT3G24480 49.704 2.59e-107 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3960g00014 - - gmx:100775544 579.326