Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3960g00012 ATGCATATGCAGTTTCCAATTTTATTTCGTATTCGTACTTCACCCCATAATCCCGATCCTGCCGCAATTACATTGGCCGCCTGGTTTTTGAATTCGCTTTCTGGGATGAAGATTGAGCAACTGGACAATGTTGATTCCACTAGGGACGAAGGGAGTAATGAGAATCAGATTGTGAGGGTTGACGCAAAGAGAGCGTTAGTTGGAGCAGGTGCTCGGATCTTGTTTTACCCGACTCTTTTGTATAATGTACTTCGGAACAAGATTGAAGCCGAGTTCAGGTGGTGGGATCAAGTCGATGAGTTTTTATTATTGGGTGCTGTTCCATTTCCTAAAGATGTTCCTCGCTTGAAGAAGCTTGGTGTGGGTGGTGTAATTACTCTGAATGAACCTTATGAAACGTTGGTTCCATCATCATTGTATCGTGCTCATGAGATTGATCATTTAATGATTCCTACAAGGGATTATCTCTTTGCCCCTTCACTAGAGGATATTAGCCGTGCCGTGAAATTCATTCATGAAAATGCATGTTGCGGTAAAACTACTTATGTCCATTGCAAAGCCGGTCGAGGAAGGAGCACGACGATTGTTCTTTGTTACTTGGTTGAATATAAGCACATGACACCCGCAGCTGCCCTGGATTATGTGCGTTCTCGCAGACCTAGGGTGCTGCTAGCACCATCACAGTGGAAGGTTGTTCAAAACTACAGCAAATGCCAACCTTCTCCTTGTATTGCCAGGCCTACTCCTACGCCATACTCTCCCTCTAGGGACGCAGTTCTTATAACCCAAGCTGACCTTGAGGGTTACCACAACGCATGCGATGCTGGTATGCAGTTGGCTGTCGTTGCTAAAGTGCCAAGGACCAAGCCCATGATAGCAAGATTATCTTGCCTGTTTGCGTCCCTTAAAGTTTCTGGTAGCAGTGTCCCAGCAGTCAGGCGGTTGCTAGTTTCTGAGGCACGCGCTTGCTAA 972 0.4599 MHMQFPILFRIRTSPHNPDPAAITLAAWFLNSLSGMKIEQLDNVDSTRDEGSNENQIVRVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQVDEFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYRAHEIDHLMIPTRDYLFAPSLEDISRAVKFIHENACCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALDYVRSRRPRVLLAPSQWKVVQNYSKCQPSPCIARPTPTPYSPSRDAVLITQADLEGYHNACDAGMQLAVVAKVPRTKPMIARLSCLFASLKVSGSSVPAVRRLLVSEARAC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3960g00012 323 CDD PTPMT1 94 237 IPR044596 GO:0004721
Pral3960g00012 323 ProSitePatterns Tyrosine specific protein phosphatases active site. 183 193 IPR016130 GO:0016311|GO:0016791
Pral3960g00012 323 ProSiteProfiles Dual specificity protein phosphatase domain profile. 94 241 IPR020422 GO:0006470|GO:0008138
Pral3960g00012 323 Gene3D Protein tyrosine phosphatase superfamily 94 239 IPR029021 -
Pral3960g00012 323 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 36 301 - -
Pral3960g00012 323 FunFam Dual specificity phosphatase domain protein 94 241 - -
Pral3960g00012 323 Pfam Dual specificity phosphatase, catalytic domain 117 236 IPR000340 GO:0008138|GO:0016311
Pral3960g00012 323 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 162 230 IPR000387 GO:0016311|GO:0016791
Pral3960g00012 323 SMART dsp_5 97 238 IPR020422 GO:0006470|GO:0008138
Pral3960g00012 323 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 236 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3960g00012 Pral-Chr3960 101430 104169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3960g00012 36 303 Protein tyrosine phosphatase (PTP) family AT2G35680 50.633 4.53e-99 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3960g00012 - - gmx:100817410 480.33