Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3960g00010 ATGAACAAGATGAGCAATTTGAGCTCTGTGAACAGTTGTGATCTGATAGATGCGAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAACCAAACCGGACTGGTTAGGTCTTCCGGCTGGCGTGAAGTTTGATCCGACGGACCAAGAACTAATCGAACACCTCGAAGCCAAAGTGGAGTCCAAGAATGTGAAATCTCACCCTTTGATCGATGAGTTCATTCCTACAATTGAAGGAGAAGACGGAATTTGTTATACCCATCCTGAGAAACTCCCAGGAGTAACAAGAGATGGGTTGAGTAGGCACTTCTTTCACAGGCCCTCGAAGGCTTACACGACTGGAACAAGAAAGAGGAGAAAAATACAGAACGAGAGCGAGATGCAAGGAGGAGAAACGAGGTGGCACAAGACGGGGAAGACGAGGCCGGTGATGGTGAACGGCAAGCAAAAGGGCTGCAAGAAGATTTTGGTACTTTACACCAATTTCGGCAAGAACCGAAAACCCGAGAAGACCAACTGGGTCATGCATCAGTACCACCTGGGCCAGCACGAGGAGGAGAAAGAAGGCGAGCTCGTGGTGTCCAAGATCTTCTACCAGACACAGCCCAGACAGTGTAATTGGTCGGATCGAAGCGCCACCACCGGCGAACCCAGCGCCGACTTCGTTAATGCCCATAGTAGTAGAAGAGACAGTGGCAGTGGCAGTTGCTCTTCTTCTAAGGAGATTAACAACAACGCTGTTGTTACAGCTCACAGAGATGATCAGATGTCGGCGGTGGTCGGGGTTGTTCCTCCCATGTCATCGTACCTTCATCATCATCATCATGCCTTGGATATTCAACAACACCTGAAACCCGACCACTTCGGATTCATTCCGTTCAGGAAAAGCTTCGACGAGGTGGGAATAGGAGAGGGTTCGATGGGGAGAGATCAAGTGCAGGCATCAGGAGAAGAAGTTAACGAAGGACAAAGGCAACAACAACAACATCATCATCATCAAGTGGCTCAGCATCATCAGAATATGGCCACCACGGCGTTCCATATAAGTAGGCCTTCACTTCCAATCTCCACCATAATCTCTCCACCTCCTCTCCATCACACTTCCATCATCCTCGATGATAACTCCTACCATGTCTCCAGAATTATGCTCCAAAATGACAACTTTCAGCAACAGCAGCAGCAACATCATAAACTAGGAGGAAGCTCTGCGTCTGGTTTGGAGGAACTCATAATGGGGTGCACTTCATCAACTGATATTAAAGCGGAATCATCCGTCTCCGTCGCAAACCAGCAAGAAGCTGAATGGCTCAAATACTCTTACTGGCCCGACCCGGATAACCCGGATCATCATGGGTAA 1383 0.4881 MNKMSNLSSVNSCDLIDAKLEEHQLCGSKQCPGCGHKFETKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNVKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNESEMQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEPSADFVNAHSSRRDSGSGSCSSSKEINNNAVVTAHRDDQMSAVVGVVPPMSSYLHHHHHALDIQQHLKPDHFGFIPFRKSFDEVGIGEGSMGRDQVQASGEEVNEGQRQQQQHHHHQVAQHHQNMATTAFHISRPSLPISTIISPPPLHHTSIILDDNSYHVSRIMLQNDNFQQQQQQHHKLGGSSASGLEELIMGCTSSTDIKAESSVSVANQQEAEWLKYSYWPDPDNPDHHG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3960g00010 460 MobiDBLite consensus disorder prediction 128 147 - -
Pral3960g00010 460 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Pral3960g00010 460 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Pral3960g00010 460 MobiDBLite consensus disorder prediction 128 148 - -
Pral3960g00010 460 FunFam NAC domain-containing protein 73 56 212 - -
Pral3960g00010 460 SUPERFAMILY NAC domain 42 208 IPR036093 GO:0003677|GO:0006355
Pral3960g00010 460 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 351 IPR044799 GO:0003700
Pral3960g00010 460 MobiDBLite consensus disorder prediction 315 348 - -
Pral3960g00010 460 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3960g00010 Pral-Chr3960 90670 95843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3960g00010 13 457 NAC Transcription Factor Family AT5G56620 51.709 5.05e-138 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral3960g00010 NAM 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3960g00010 - - gmx:100795246 692.96