Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3960g00005 ATGATGCTCGGAGAACCCCATCACACGAATCCGACGGTTCAGATACCGCCGTGGCCGGTTATCGATGATCAGATGCCGGAGGTGTACTCTCCCTACTCCATGAGTGGCATGTCTGCAAACTCCGATGGCAATGCCAGCGGCGGCGACTACTCTCCGTACTACTTGCAAGAAGCACTGACGGCACTCCAGCGTTATCTGCCGTCGAACGACGCCGATATCGACTCCGACTCCGAGATTCTTGGTCGAGATTTGGACGCTCCGGTGGACGCCTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGTGCACGGGGCCGGTCACATGACTGGACTGAGTGTCCTTATGCTCATCCTGGTGAGAAGGCTCGCCGTAGGGACCCGAGGAAGTATCACTATTCTGGTACTGCATGCCCTGATTTCCGCAAGGGGAATTGCAAGAAGGGGGATGCATGCGAGTTTGCTCATGGCGTGTTTGAGTGTTGGCTTCATCCAGCCCGTTATCGTACACAGCCATGCAAGGATGGCACCAGTTGCCGCCGCAGGGTCTGTTTCTTTGCTCACACCCCGGAGCAACTCAGGGTCCTTCCTCAGCAGAGTCCGAGGAGTGCTAACTCGGTGGACTCCTATGATGGGTCTCCTCTCAGGCAAGCGATTGAGTCTTCCTGCGCAAAAACGCTTCCATTCATGTCATCTCCGGGTTCTATTTCTCCTCCAGCAACTCCTCCGGCAGAATCTCCTCCTATGTCGCCGATGACACAGTCTCTGAGCCGCTCTCTGGGTTCGAGCTCCATCAATGAGATGGTGGCTTCTCTGCGTAATCTACAGTTTGGAAAGGTAAAGTCACTCCCCCCTTCTAGAAATGTTCCAATGGGGTCTCCCCGTTTTGGATCTCCACGCGGATCGGTGCTCCGTCCAGATTTCTGTAGCCTCCCGTCAACCCCTACTGAGGCACCGACTCGTTCTGGGGCCAGCTATTTTGATCTTTGGGATCAGGGTTGTGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCTGGAAGAGACATAAGGGCGAAGATGTTTGAAAAACTAAGCAAAGAGAATTCGCTGGATCCATCGGGTCCCAGCACATCCACTGGAGCTCCGGATGTTGGGTGGGTTTCGGAGCTGGTTAAGTGA 1167 0.5493 MMLGEPHHTNPTVQIPPWPVIDDQMPEVYSPYSMSGMSANSDGNASGGDYSPYYLQEALTALQRYLPSNDADIDSDSEILGRDLDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSVDSYDGSPLRQAIESSCAKTLPFMSSPGSISPPATPPAESPPMSPMTQSLSRSLGSSSINEMVASLRNLQFGKVKSLPPSRNVPMGSPRFGSPRGSVLRPDFCSLPSTPTEAPTRSGASYFDLWDQGCEEEPVMERVESGRDIRAKMFEKLSKENSLDPSGPSTSTGAPDVGWVSELVK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3960g00005 388 MobiDBLite consensus disorder prediction 365 379 - -
Pral3960g00005 388 MobiDBLite consensus disorder prediction 238 252 - -
Pral3960g00005 388 FunFam Zinc finger CCCH domain-containing protein 66 93 161 - -
Pral3960g00005 388 MobiDBLite consensus disorder prediction 233 261 - -
Pral3960g00005 388 MobiDBLite consensus disorder prediction 286 305 - -
Pral3960g00005 388 PANTHER UNKEMPT FAMILY MEMBER 51 388 IPR045234 -
Pral3960g00005 388 MobiDBLite consensus disorder prediction 359 388 - -
Pral3960g00005 388 Gene3D - 136 199 - -
Pral3960g00005 388 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Pral3960g00005 388 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Pral3960g00005 388 SMART c3hfinal6 135 161 IPR000571 GO:0046872
Pral3960g00005 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 160 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3960g00005 Pral-Chr3960 34162 35798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3960g00005 85 293 C2H2 Transcription Factor Family AT5G12850 48.611 9.16e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral3960g00005 zf-CCCH 3.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3960g00005 - - qsa:O6P43_003933 674.855