Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3960g00004 ATGGGAAGAGCTCCCTGTTGCGACAAAGCTAGTGTGAAAAGAGGACCATGGTCTCCTGAAGAAGATGCCACCCTCAAGAACTACCTCCAGAAGCATGGCACCGGTGGCAATTGGATCGCTCTCCCCAAAAAAGCTGGTCTTAAGCGTTGCGGGAAGAGCTGTCGTCTGAGATGGCTCAATTATCTTAGGCCTCATATAAGGCTTGGAGGGTTTACTGACGACGAAGACAAAATTATCTGCACTCTCTATGCTACCCTCGGAAGCAGGTGGTCTCTTATAGCTGCTCAGTTGCCTGGAAGAACGGACAACGATGTGAAAAACCACTGGAACACAAAGTTGAAGAAGAAGTATTTTGCAGCAAACAATGGTAATGGGACCACCAGCAACATTAACGACGGCAATAGTTATGTACCGTTCTTATCCTTTCCCCCTCAAACACCTCAAGGCGATGCCTTTTTGGTAGGTCACAAGGACTCGTCAGAGTATTTTGAGCCTTGTGTTCTGGAGTTGGAGCAAAATACAGCTCCATTTTCAGGACCAAAACCTCTGGAGCATCAAGTTTCAGAGGTTGGCAGCGGCGTGAAGAGCGAAAGCTGCGGGATGCCATGTTCTATGGAAGTTTCATCTGCTTCAGGTTGGTTGGCAGAAAAGAACGATCATCCCAAGTGGGTTGGCTTTAAGCATGATGATCATCAATATGATGCAAGTATGCCTGATCTTGTCTATGATGATCTCTTCATTAATGGCTTTGCTTCCTTTGATCAAGGTCTCATCAACGAATGCTTCCCAAATTAA 795 0.4629 MGRAPCCDKASVKRGPWSPEEDATLKNYLQKHGTGGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIRLGGFTDDEDKIICTLYATLGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKYFAANNGNGTTSNINDGNSYVPFLSFPPQTPQGDAFLVGHKDSSEYFEPCVLELEQNTAPFSGPKPLEHQVSEVGSGVKSESCGMPCSMEVSSASGWLAEKNDHPKWVGFKHDDHQYDASMPDLVYDDLFINGFASFDQGLINECFPN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3960g00004 264 PANTHER OS09G0431300 PROTEIN 1 122 - -
Pral3960g00004 264 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pral3960g00004 264 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral3960g00004 264 Gene3D - 7 68 - -
Pral3960g00004 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pral3960g00004 264 CDD SANT 71 113 IPR001005 -
Pral3960g00004 264 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pral3960g00004 264 SMART sant 67 115 IPR001005 -
Pral3960g00004 264 SMART sant 13 64 IPR001005 -
Pral3960g00004 264 Gene3D - 70 134 - -
Pral3960g00004 264 CDD SANT 16 62 IPR001005 -
Pral3960g00004 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pral3960g00004 264 FunFam Transcription factor RAX3 7 68 - -
Pral3960g00004 264 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pral3960g00004 264 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3960g00004 Pral-Chr3960 20513 21553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3960g00004 1 148 MYB Transcription Factor Family AT5G57620 64.189 8.42e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3960g00004 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3960g00004 K09422 - gmx:778160 271.937