Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3960g00003 ATGACAATGCTGATCAGATTCATCTCCTCGACTATGATGCTTCATCTTGTTCTTATGGTTTCAGTTCTTGGACAGAGACAAACAGGCTTCATCAGTATTGATTGCGGAGGTCCAGAGAATTTTGAATACACAGATGATAGCGATCAAATAAAGTACAGCACAGATGGAGCCTACATACAAGCAGGGGTTAACAAAAACATATCGTCAGAATACTCATATCCAAACAATCCCAATCTACCATTACCAATGTCTGACCTCAGAAGTTTCCCCAAGGGAAAGAGGAACTGTTACACATTAAGAGCTGGACAAAGAGGAAGCTTACGTTTGATAAGGGCCTCTTTTTTGTATGGGAACTACGATGGAGAAAACAGGCTTCCAGAATTTGATCTCTATGTTGGTGCCAATTTCTGGTCCTCAGTAAGCTTCAAAAATTTTTCAGAGCCAGTTACACTGGAAATTATCAGCATGGCAGAATCAGAGGTGACGAATGTTTGTCTTGTGGACAGGGGACTGGGAACTCCTTTTATCTCAGCGTTGGAACTAAGACCACTCAATAGTTCGATTTATAATACTGAGTTTGGTGCATCAGCTTCACTGTTACTTTTCAAAAGATGGGACCTTGGAGCAATTAATGGTAGCGGTAGATATGAAGATGACATATATGACAGAATTTGGTCCCCATATGGCTCATCTTCCTGGGATTCTGTCAGCACTTCCCATGCTATAAATGGCAATAACAATGGCTATAGAATGCCATCTGAAGTGATGAGAACTTCTTCAAGACCCAAAAATGTTAGTGCTCCTTTTGAATTCTCTTGGACCCCAAATGCTCCAAATTCAAAATTCTATGTATACTTGTATTTTGCTGAGGTGAAGCAGCTTAAGATTAACCAACTAAGGAAATTCAGAATATCCTGGAATGGACATTCATTGTTTGGACCCTTAGTCCCAAGCTACTTAGATGCAACCACAATATCGAATTTGAAACCCCTGATGGGACATGAACATCGAATTTCTCTTCATAGAACTGAAGATTCAACCCTTCCGCCCATGCTTAACGCAGTTGAGATATTTGAAGTTAGAATGATGGATGCATTCCCAACACTTGAGAAGGATGTAAATGCTATCGTGGATATCAAAGATGCATATGGAATTGAAAGAAACTGGGTGGGTGATCCGTGTGAGCCAAAGAACCACACTTGGGAAGGCTTAACATGTAAATATAGCAATTCACATCCTCCACGAATCGTATCTCTGAATCTGAGCTCAAGCAGCTTGGGTGGGGTGATTTCTTCTGCCATCTGCAACCTCTTATCACTTGAATCATTGGATTTATCAAACAATAGCTTATCGGGGTCAATTCCGAAGTTTCTGGCAGAGATGAGATCTCTCAAAATTTTGAATTTGAAAGGCAACCAACTATCAGGTCTTGTCCCTACAGCTCTTCTTAAAAGATCAAGGGCAGGATTGCTTAAACTGAGTGTGGATGCCCAGAATCTTTGTGGCTCAGACAAGTGCGAGAAGAAGCTAAATGTATTTGTTCCCATAGTTGCTACGATATCATCACTTCTGGTTCTACTGATTGTTTTCATTATCATCTGGAAAGTTAGAAGAAATGTGCAACCAGATCATACAAGTAATTCCAACAAAGAAAGAACACTTGTGGCATCAAAGAAGTGGCAATATAGTTTTGCAGAGGTATTGGACATCACCAACAACTTTGAAATTGTCATTGGGAAGGGGGGATTTGGGACTGTGTACCGGGGTCAGATGAAAGATGGGAACCAAGTGGCAGTAAAAAAGCTTTCTCCATTATCATCTCAAGGGCCAAGGGAATTTCAGACTGAGGCTGAGCTCTTGATGACAGTCCATCACAAAAATTTGGTAGCCTTCATTGGTTATTGCGATGATGGAAACAAAATGGCACTCATATATGAGTACATGGGAAATGGAAACCTCAAAAACTACCTTTCAGCAAGAAATTCACGTTGCTTGACTTGGGGAAGGAGACTTCAGATAGCAATTGACGCTGCACAGGGATTGGAGTATTTACACCATGGATGCAAGCCACCTATAATACACAGAGATGTGAAGACGGCCAATATTCTTCTAAGTGAGAAGTTGGAAGCTAAGATAGCAGATTTTGGCCTCTCCCACGTGTTTAAGAATGACACTAGAGATGTAGGATCCTCAGTGAATACAAACGATCAAGGAAATGCAGAACCTGCTGTTATGGGTACCAAAGGGTACCTTGACCCAGAATACTACAAATCAAGGAAGTTGAATGAGAAAAGTGATGTCTATAGCTTTGGAATTGTTCTGTTGGAGCTAATTACAGGTCAACCTGCTGTATTAAAGGGAGAGGAATCAGTTCACATACTTGACTGGTTAAGATCTGAGCTTCGAAGAGGAGATTTGAGTAAAATTGTAGATCCAAAGCTACATGGTAAATACAATGCATGTTCTGTGTGGAAGGCTTTAGGAGCAGCAATGGCATGTACTGCGCCAGCCTCAATTCATAGACCTACAATGAGTTGTGTGTTATCTGAGCTAAAAAAGTGTCTGGAAACAGAGGTGCCTAGTCAGAGTGAAACATATATGGTACCAGCGCAGATCTATAGGGAGTTGCATAGTTTGTCTGAGACATATTCATTGGATGATGAATCTATCACCTACCCTTTTCCAAGATAG 2691 0.4091 MTMLIRFISSTMMLHLVLMVSVLGQRQTGFISIDCGGPENFEYTDDSDQIKYSTDGAYIQAGVNKNISSEYSYPNNPNLPLPMSDLRSFPKGKRNCYTLRAGQRGSLRLIRASFLYGNYDGENRLPEFDLYVGANFWSSVSFKNFSEPVTLEIISMAESEVTNVCLVDRGLGTPFISALELRPLNSSIYNTEFGASASLLLFKRWDLGAINGSGRYEDDIYDRIWSPYGSSSWDSVSTSHAINGNNNGYRMPSEVMRTSSRPKNVSAPFEFSWTPNAPNSKFYVYLYFAEVKQLKINQLRKFRISWNGHSLFGPLVPSYLDATTISNLKPLMGHEHRISLHRTEDSTLPPMLNAVEIFEVRMMDAFPTLEKDVNAIVDIKDAYGIERNWVGDPCEPKNHTWEGLTCKYSNSHPPRIVSLNLSSSSLGGVISSAICNLLSLESLDLSNNSLSGSIPKFLAEMRSLKILNLKGNQLSGLVPTALLKRSRAGLLKLSVDAQNLCGSDKCEKKLNVFVPIVATISSLLVLLIVFIIIWKVRRNVQPDHTSNSNKERTLVASKKWQYSFAEVLDITNNFEIVIGKGGFGTVYRGQMKDGNQVAVKKLSPLSSQGPREFQTEAELLMTVHHKNLVAFIGYCDDGNKMALIYEYMGNGNLKNYLSARNSRCLTWGRRLQIAIDAAQGLEYLHHGCKPPIIHRDVKTANILLSEKLEAKIADFGLSHVFKNDTRDVGSSVNTNDQGNAEPAVMGTKGYLDPEYYKSRKLNEKSDVYSFGIVLLELITGQPAVLKGEESVHILDWLRSELRRGDLSKIVDPKLHGKYNACSVWKALGAAMACTAPASIHRPTMSCVLSELKKCLETEVPSQSETYMVPAQIYRELHSLSETYSLDDESITYPFPR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3960g00003 896 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 648 864 - -
Pral3960g00003 896 ProSitePatterns Protein kinases ATP-binding region signature. 578 601 IPR017441 GO:0005524
Pral3960g00003 896 FunFam Leucine-rich repeat receptor-like kinase 371 503 - -
Pral3960g00003 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672|GO:0006468
Pral3960g00003 896 ProSiteProfiles Leucine-rich repeat profile. 463 484 IPR001611 GO:0005515
Pral3960g00003 896 PRINTS Leucine-rich repeat signature 440 453 - -
Pral3960g00003 896 PRINTS Leucine-rich repeat signature 461 474 - -
Pral3960g00003 896 Pfam Malectin-like domain 33 360 IPR024788 -
Pral3960g00003 896 PANTHER OS07G0107800 PROTEIN-RELATED 31 855 - -
Pral3960g00003 896 FunFam Leucine-rich repeat receptor-like protein kinase 547 647 - -
Pral3960g00003 896 SUPERFAMILY L domain-like 388 484 - -
Pral3960g00003 896 ProSiteProfiles Protein kinase domain profile. 572 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3960g00003 896 CDD STKc_IRAK 578 853 - -
Pral3960g00003 896 SUPERFAMILY Protein kinase-like (PK-like) 553 851 IPR011009 -
Pral3960g00003 896 Pfam Leucine rich repeat 415 474 IPR001611 GO:0005515
Pral3960g00003 896 ProSiteProfiles Leucine-rich repeat profile. 439 461 IPR001611 GO:0005515
Pral3960g00003 896 Gene3D Transferase(Phosphotransferase) domain 1 648 873 - -
Pral3960g00003 896 Gene3D Ribonuclease Inhibitor 373 489 IPR032675 -
Pral3960g00003 896 SMART serkin_6 572 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3960g00003 896 Pfam Protein tyrosine and serine/threonine kinase 576 783 IPR001245 GO:0004672|GO:0006468
Pral3960g00003 896 Gene3D Phosphorylase Kinase; domain 1 535 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3960g00003 Pral-Chr3960 13055 17236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3960g00003 16 882 Receptor kinase-like Gene Family AT4G29180 50.623 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Pral3960g00003 Malectin_like 7.5e-104 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3960g00003 - - lang:109342711 1205.28