Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3957g00046 ATGAAGCGTCAAGTATTAGTAGTGAGAAAAACTGAAGGTGGAAGAGGTTCAAGCGGAAGTGTGAGATATGGGGAGTGTCAGAAGAATCATGCGGCTAATTCCGGCGGATACGCCGTTGACGGTTGCCGAGAATTCATAGCCAGCGGCGAGGACACAAATGCTGCTCTTACGTGTGCTGCCTGTGGATGCCACAGAAACTTCCACAAGAGATTGGTGGACGCTACTGATGAGTCCTCTTCACTTCCTTCAAATTAA 255 0.4863 MKRQVLVVRKTEGGRGSSGSVRYGECQKNHAANSGGYAVDGCREFIASGEDTNAALTCAACGCHRNFHKRLVDATDESSSLPSN 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3957g00046 84 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 71 IPR006456 -
Pral3957g00046 84 Pfam ZF-HD protein dimerisation region 21 71 IPR006456 -
Pral3957g00046 84 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 22 70 IPR006456 -
Pral3957g00046 84 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3957g00046 Pral-Chr3957 323707 323961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3957g00046 2 84 Zinc finger-homeobox gene family AT1G18835 61.176 1.41e-27 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral3957g00046 ZF-HD_dimer 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3957g00046 - - shis:125216275 117.087