Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3957g00045 ATGGGGAGACCGCCTTGTTGTGATAAAGAAGGGGTCAAGAAAGGACCTTGGACTCCCGAAGAAGATATCGTTTTGGTCTCTTATATCCAGGAACATGGTCCTGGCAACTGGAGGGGTGTGCCCACTAATACAGGGCTTGCACGATGCAGTAAGAGTTGCAGACTTAGATGGACTAATTACCTTAAGCCAGGAATTAAACGTGGTAACTTTACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCCCTTTTGGGCAACAGATGGGCAGCCATAGCCTCGTACCTTCCCCAGAGAACCGACAATGACATAAAAAACTATTGGAATACCCATTTGAAGAAGAAGCTCAAGAAATTGCAACCATCAGTTGGCCAGGGCAACTACGGAGATGGGTCATCAGCCTCACAATCAATGCCCCGAGGCCAGTGGGAAAGAAGACTTCAAACGGACATCCACATGGCCAAGAGAGCACTCAGCGAGGCTCTATCTCCAGATCAGACACCTTCTTGCTTATCCGAATCAAATCCCTCTAAGCCAGCAACCCAGCGCTTAAGCTATGCCTCAAGTGCAGAAAACATAGCTCGTTTGTTGAAAGGATGGATGAAAAATCCGCCAAAGGCTTCCAAAACAAGCTCTGCAATCACACAAAGTTCTAACCTAGCTGCTTCAGCTTCTGGTTCAGGTCACGATACTGCTTCTAGCGAAGGAATCACCACAACAAGTGCATCGAAGGGAAACAGTACTGTTCAATTATTCGACACTAGTTTTGACTCCTTGCTCGGGTTTGAGTCTTTGGATTGCTCTTCGAATTCTGATTTTTCTCCCGAGGCTACTCTCGAAAGCAGGCAGGATTGTACAGGGGCCGATATGCCGTTATATTTGCTTGAGAAGTGGCTTCTCGATGACGCTGCTACAATCACATCAGTTGAAGATGCAGGCGTCCATTTTTTCTAG 954 0.4675 MGRPPCCDKEGVKKGPWTPEEDIVLVSYIQEHGPGNWRGVPTNTGLARCSKSCRLRWTNYLKPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQPSVGQGNYGDGSSASQSMPRGQWERRLQTDIHMAKRALSEALSPDQTPSCLSESNPSKPATQRLSYASSAENIARLLKGWMKNPPKASKTSSAITQSSNLAASASGSGHDTASSEGITTTSASKGNSTVQLFDTSFDSLLGFESLDCSSNSDFSPEATLESRQDCTGADMPLYLLEKWLLDDAATITSVEDAGVHFF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3957g00045 317 Gene3D - 13 66 - -
Pral3957g00045 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral3957g00045 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 229 - -
Pral3957g00045 317 CDD SANT 16 61 IPR001005 -
Pral3957g00045 317 SMART sant 13 63 IPR001005 -
Pral3957g00045 317 SMART sant 66 114 IPR001005 -
Pral3957g00045 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pral3957g00045 317 MobiDBLite consensus disorder prediction 162 186 - -
Pral3957g00045 317 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral3957g00045 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral3957g00045 317 MobiDBLite consensus disorder prediction 205 244 - -
Pral3957g00045 317 MobiDBLite consensus disorder prediction 125 142 - -
Pral3957g00045 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral3957g00045 317 MobiDBLite consensus disorder prediction 119 142 - -
Pral3957g00045 317 CDD SANT 69 111 IPR001005 -
Pral3957g00045 317 FunFam Transcription factor MYB30 68 126 - -
Pral3957g00045 317 MobiDBLite consensus disorder prediction 202 244 - -
Pral3957g00045 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pral3957g00045 317 MobiDBLite consensus disorder prediction 160 186 - -
Pral3957g00045 317 Gene3D - 68 126 - -
Pral3957g00045 317 FunFam MYB-related transcription factor 13 66 - -
Pral3957g00045 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3957g00045 Pral-Chr3957 313642 315121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3957g00045 1 304 MYB Transcription Factor Family AT5G62470 49.573 2.59e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3957g00045 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3957g00045 K09422 - gmx:780542 416.772