Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3957g00031 ATGTCTAGCAGAAGGTCCAGGCAACAATCTTCATCAGGGTCTTCAACAATCTCCGATGACCAAATCATCCAACTTGTTTCCCAGTTGCGTCAACTTGTTCCTGAGATTCGCGATACTCGCCGCTCTAACAAGGCATCTGCATCAAAGGTCCTACAAGAGACCTGCAACTACATCAGAAGCTTAAACAGAGAAGTGGACGACTTGAGCCAGCGACTCTCTCAGTTGTTGGCCACAATCGATGCTGACAGTGCCGAGGCTGCCATCATTAGGAGCCTCATTAATCCTTAA 288 0.4792 MSSRRSRQQSSSGSSTISDDQIIQLVSQLRQLVPEIRDTRRSNKASASKVLQETCNYIRSLNREVDDLSQRLSQLLATIDADSAEAAIIRSLINP 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3957g00031 95 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 61 IPR011598 GO:0046983
Pral3957g00031 95 Pfam Helix-loop-helix DNA-binding domain 22 61 IPR011598 GO:0046983
Pral3957g00031 95 Coils Coil 51 78 - -
Pral3957g00031 95 Gene3D - 20 90 IPR036638 GO:0046983
Pral3957g00031 95 FunFam Transcription factor ILI6 5 90 - -
Pral3957g00031 95 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pral3957g00031 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 80 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3957g00031 Pral-Chr3957 227070 229045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3957g00031 17 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 74.026 1.19e-35 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3957g00031 HLH 6.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3957g00031 - - gmx:100794486 128.257