Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3957g00029 ATGATACTGCCCTCATCTGCTTTTCCCATGGCCTTCCCTCCTCACACTTTCCTGTTTCAGACCCACGAAGATCATGATCAACTCCCTTCCACCTCCATCAACGCCTATAACTCCTTCACACCCAAGTTCTTCGAAGGCGGTGCAGTACCTTTGGTGTTGAAGAGATCCGTGTCATTTTCAGGGATCGAGAACAAGCATGAGGATGAAGAGCTGTCCGATGATGGATCTCAGCTGATGGGGGAGAAGAAGAAGAGACTGAACATGGAACAAGTGAAGGCACTGGAAAAGAGTTTCGAGTTAGGGAACAAGCTGGAGCCTGAACGCAAAATGCAGCTGGCCAAGGCTCTGGGCCTTCAGCCGAGGCAGATCGCTATTTGGTTCCAGAATAGGAGGGCCAGATGGAAAACCAAGCAGCTCGAGAAGGAATATGAAGCTCTCAAGAAGAAGTTTGAAGCTCTCAAGGCTGACAACGATGCCCTTAAGGCTCATAACCACAAATTACACGCTGAGATACAAGCTTTAAGGGGGAGAGATTGCTGTGAGGGCGGAACTATCAATTTTAAGAAAGAACCAGAGGCTTGTTGGAGCAACGGGAGTACTGAGAATAGCTCGGATATTAACTTGGATCTCTCAAGATCACAATTTCTAAACAGTACTCTAACTTCAGTACAGAATGGTAAAAGCCTTCTTCCCTCTAATGCCCTTAAGCCAACCAGCATAACCCAGCTCCTCCAATGCTCATCCAGATCAGAACTTCAAGATGAAAGCTTGTCCAACATGTTTCATGGCGGCGTCGACGAGCACCAGAATTTCTGGCCCTGGCCTGACCACCACCAGTTTCATTGA 846 0.4787 MILPSSAFPMAFPPHTFLFQTHEDHDQLPSTSINAYNSFTPKFFEGGAVPLVLKRSVSFSGIENKHEDEELSDDGSQLMGEKKKRLNMEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKKFEALKADNDALKAHNHKLHAEIQALRGRDCCEGGTINFKKEPEACWSNGSTENSSDINLDLSRSQFLNSTLTSVQNGKSLLPSNALKPTSITQLLQCSSRSELQDESLSNMFHGGVDEHQNFWPWPDHHQFH 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3957g00029 281 SUPERFAMILY Homeodomain-like 80 139 IPR009057 -
Pral3957g00029 281 Gene3D - 75 147 - -
Pral3957g00029 281 CDD homeodomain 82 138 IPR001356 GO:0003677
Pral3957g00029 281 Pfam Homeobox associated leucine zipper 137 176 IPR003106 GO:0006355|GO:0043565
Pral3957g00029 281 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Pral3957g00029 281 FunFam Homeobox-leucine zipper protein ATHB-13 73 141 - -
Pral3957g00029 281 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Pral3957g00029 281 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Pral3957g00029 281 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Pral3957g00029 281 Coils Coil 129 163 - -
Pral3957g00029 281 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Pral3957g00029 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 59 228 IPR045224 GO:0003700
Pral3957g00029 281 SMART HOX_1 80 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3957g00029 Pral-Chr3957 212203 214181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3957g00029 10 276 Homeobox Transcription Factor Family AT3G01220 53.237 4.20e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral3957g00029 Homeodomain 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3957g00029 K09338 - gmx:100790803 369.392