Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3957g00028 ATGATACTGCCCTCATCTGCTTTTCCCATGGCCTTCCCTCCTCACACTTTCCTGTTTCAGACCCACGAAGATCATGATCAACTCCCTTCCACCTCCATCAACGCCTATAACTCCTTCACACCCAAGTTCTTCGAAGTACCTTTGGTGTTGAAGAGATCCGTGTCATTTTCAGGGATCGAGAACAAGCATGAGGATGAAGAGCTGTCCGATGATGGATCTCAGCTGATGGGGGAGAAGAAGAAGAGACTGAACATGGAACAAGTGAAGGCACTGGAAAAGAGTTTCGAGTTAGGGAACAAGCTGGAGCCTGAACGCAAAATGCAGCTGGCCAAGGCTCTGGGCCTTCAGCCGAGGCAGATCGCTATTTGGTTCCAGAATAGGAGGGCCAGATGGAAAACCAAGCAGCTCGAGAAGGAATATGAAGCTCTCAAGAAGAAGTTTGAAGCTCTCAAGGCTGACAACGATGCCCTTAAGGCTCATAACCACAAATTACACGCTGAGATACAAGCTTTAAGGGGGAGAGATTGCTGTGAGGGCGGAACTATCAATTTTAAGAAAGAACCAGAGGCTTGTTGGAGCAACGGGAGTACTGAGAATAGCTCGGATATTAACTTGGATCTCTCAAGATCACAATTTCTAAACAGTACTCTAACTTCAGTACAGAATGGTAAAAGCCTTCTTCCCTCTAATGCCCTTAAGCCAACCAGCATAACCCAGCTCCTCCAATGCTCATCCAGATCAGAACTTCAAGATGAAAGCTTGTCCAACATGTTTCATGGCGGCGTCGACGAGCACCAGAATTTCTGGCCCTGGCCTGACCACCACCAGTTTCATTGA 837 0.4755 MILPSSAFPMAFPPHTFLFQTHEDHDQLPSTSINAYNSFTPKFFEVPLVLKRSVSFSGIENKHEDEELSDDGSQLMGEKKKRLNMEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKKFEALKADNDALKAHNHKLHAEIQALRGRDCCEGGTINFKKEPEACWSNGSTENSSDINLDLSRSQFLNSTLTSVQNGKSLLPSNALKPTSITQLLQCSSRSELQDESLSNMFHGGVDEHQNFWPWPDHHQFH 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3957g00028 278 Coils Coil 126 160 - -
Pral3957g00028 278 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Pral3957g00028 278 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Pral3957g00028 278 SUPERFAMILY Homeodomain-like 77 136 IPR009057 -
Pral3957g00028 278 SMART HOX_1 77 138 IPR001356 GO:0003677
Pral3957g00028 278 FunFam Homeobox-leucine zipper protein ATHB-13 70 138 - -
Pral3957g00028 278 CDD homeodomain 79 135 IPR001356 GO:0003677
Pral3957g00028 278 Gene3D - 72 144 - -
Pral3957g00028 278 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Pral3957g00028 278 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Pral3957g00028 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 225 IPR045224 GO:0003700
Pral3957g00028 278 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Pral3957g00028 278 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3957g00028 Pral-Chr3957 212203 214181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3957g00028 10 273 Homeobox Transcription Factor Family AT3G01220 52.727 2.57e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral3957g00028 Homeodomain 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3957g00028 K09338 - gmx:100816097 362.844