Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3957g00027 ATGATACTGCCCTCATCTGCTTTTCCCATGGCCTTCCCTCCTCACACTTTCCTGTTTCAGACCCACGAAGATCATGATCAACTCCCTTCCACCTCCATCAACGCCTATAACTCCTTCACACCCAAGTTCTTCGAAGGGATCGAGAACAAGCATGAGGATGAAGAGCTGTCCGATGATGGATCTCAGCTGATGGGGGAGAAGAAGAAGAGACTGAACATGGAACAAGTGAAGGCACTGGAAAAGAGTTTCGAGTTAGGGAACAAGCTGGAGCCTGAACGCAAAATGCAGCTGGCCAAGGCTCTGGGCCTTCAGCCGAGGCAGATCGCTATTTGGTTCCAGAATAGGAGGGCCAGATGGAAAACCAAGCAGCTCGAGAAGGAATATGAAGCTCTCAAGAAGAAGTTTGAAGCTCTCAAGGCTGACAACGATGCCCTTAAGGCTCATAACCACAAATTACACGCTGAGATACAAGCTTTAAGGGGGAGAGATTGCTGTGAGGGCGGAACTATCAATTTTAAGAAAGAACCAGAGGCTTGTTGGAGCAACGGGAGTACTGAGAATAGCTCGGATATTAACTTGGATCTCTCAAGATCACAATTTCTAAACAGTACTCTAACTTCAGTACAGAATGGTAAAAGCCTTCTTCCCTCTAATGCCCTTAAGCCAACCAGCATAACCCAGCTCCTCCAATGCTCATCCAGATCAGAACTTCAAGATGAAAGCTTGTCCAACATGTTTCATGGCGGCGTCGACGAGCACCAGAATTTCTGGCCCTGGCCTGACCACCACCAGTTTCATTGA 801 0.4782 MILPSSAFPMAFPPHTFLFQTHEDHDQLPSTSINAYNSFTPKFFEGIENKHEDEELSDDGSQLMGEKKKRLNMEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKKFEALKADNDALKAHNHKLHAEIQALRGRDCCEGGTINFKKEPEACWSNGSTENSSDINLDLSRSQFLNSTLTSVQNGKSLLPSNALKPTSITQLLQCSSRSELQDESLSNMFHGGVDEHQNFWPWPDHHQFH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3957g00027 266 Coils Coil 114 148 - -
Pral3957g00027 266 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Pral3957g00027 266 SUPERFAMILY Homeodomain-like 65 124 IPR009057 -
Pral3957g00027 266 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Pral3957g00027 266 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Pral3957g00027 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 213 IPR045224 GO:0003700
Pral3957g00027 266 FunFam Homeobox-leucine zipper protein ATHB-13 58 126 - -
Pral3957g00027 266 Gene3D - 60 132 - -
Pral3957g00027 266 SMART HOX_1 65 126 IPR001356 GO:0003677
Pral3957g00027 266 CDD homeodomain 67 123 IPR001356 GO:0003677
Pral3957g00027 266 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Pral3957g00027 266 Pfam Homeobox associated leucine zipper 122 161 IPR003106 GO:0006355|GO:0043565
Pral3957g00027 266 Pfam Homeodomain 67 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3957g00027 Pral-Chr3957 212203 214181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3957g00027 10 261 Homeobox Transcription Factor Family AT3G01220 53.532 6.03e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral3957g00027 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3957g00027 K09338 - gmx:100790803 349.747