Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3946g00002 ATGCATTCAATCCACAGTGCTTCTTGCTATGCTAACCTCAACCACTCTCTATCCCAGTTCATTCCAGTTTCCAACTGTTTGGTTGGATCCAATGTGCTACTGGCCTCCTGCGCACCACCGGCTGTTCCTAGCTTCAGATTGCGTGCTATTCATTCTGAATTCTTGCCCAGAATTAGTTATTTTCCGAACCCAAGTTTTGTTTTCGCACGCAGGAAACCCTGGCGCTGTGTAGTAGCCAGGGCCACCGGAACTGACTACTATTCGACTTTGAAAGTTAGTAAAAATGCTTCTTTGCAAGAGATTAAGAGCTCTTACAGAAAACTAGCCCGTAAGTATCATCCAGATATGAACAAGAGCCCGGGGGCAGAAGAGAAATTCAAGGAGATAAGTGCTGCATATGAGGTTCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGGCAGGTCTACAAGGAGAAAATGGAGGGTCAGCTGGTACTTCAGGGGTTGATCCTTTTGATGTATTTGATGCATTCTTTGGTGGTTCGGACGGTCTATTTGGAGGTGGTGATGAACTAGGAGGAATGAACTTCAATTTGAGAAACAACAGAAAAAGGGGTCTTGATATTCGGTTTAACATGAACTTGAGCTTTGAGGAATCTATTTTTGGAGGAAGGAGAGAAATCGAAGTTCCTTGTTTTCAGACATGTAATGATTGTGATGGTACAGGAGCTAAATCAAAGGATTGCATTAAGCCATGCATAAATTGTGGTGGCAGAGGAGGAGAGATGAAAAGTCAAAGAACCCCCTTTGGAGTAATTTCTCAGGTTTCAACCTGCTCTAAGTGCCGTGGTCTTGGCAAGATAGTCACTGATAACTGTCAAAGGTGTGGTGGCAGTGGCATGGTGCAGTCTAAACAAACAATGGAAATGGTCACTCCTCCTGGTGTCAATGACGGAGCCACAATGCAAATTCGAGGCGAAGGGAATTTTGATAAGAATAGGGGTACAGCTGGTGACCTTTACATAGTCATCCATGTAGATGAAAAAGATGGAGTTTGGAGGGAAGGTCTTCACTTGTACTCAAAGATTAATATTGACTTCACAGAGGCAATTCTAGGGTCTGTTAAAAAGGTAGAAACTGTTGAGGGTTTAAGGGATCTCCGAGTACCTTCTGGCATTCAACCAGGAGATTCCGTCAAGTTATCACGTATGGGAGTTCCTGACATGAACAAACCATCTGTTCGGGGCGATCATTACTTCATTGTGAATGTCCTCATCCCTAAAAGTATCAGTGTTGCTGAACGTGTACTTGTTGAGGAATTGGCTTCACTCAGATCATCTGGCGAAGATACCCCAATTTCTTCTAATAACATTGGGACACCTAAAGGGGGAGTAGATGATTTCAAAAAGAGGCACCCAAAACGCCATTCAAGCATGGGAAGCAAGCAAGGTTCTCTATGGAGATCAATCAGGAGTTTCTTAAGGGGAGGGCAATCTCAAGAGAAGTTTGCATCTATTAGCTTGGATTCCTCAGCAGCGTCGTGGAGATTTGGCAAGTCCAACTCATCTAACCCTAATTATTTTGTATTTGGTTTCGTTATGAGTTGTATTATTTTCTATATATCTAGGTCTTATTTCGCTTTGTTTAATAAACGGACCCTTCCCTCTACCCATAGAACACCTAGTGAAAGGACATTAAAAGGAAGAGATTTTTCTGTTTGA 1713 0.4262 MHSIHSASCYANLNHSLSQFIPVSNCLVGSNVLLASCAPPAVPSFRLRAIHSEFLPRISYFPNPSFVFARRKPWRCVVARATGTDYYSTLKVSKNASLQEIKSSYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLQGENGGSAGTSGVDPFDVFDAFFGGSDGLFGGGDELGGMNFNLRNNRKRGLDIRFNMNLSFEESIFGGRREIEVPCFQTCNDCDGTGAKSKDCIKPCINCGGRGGEMKSQRTPFGVISQVSTCSKCRGLGKIVTDNCQRCGGSGMVQSKQTMEMVTPPGVNDGATMQIRGEGNFDKNRGTAGDLYIVIHVDEKDGVWREGLHLYSKINIDFTEAILGSVKKVETVEGLRDLRVPSGIQPGDSVKLSRMGVPDMNKPSVRGDHYFIVNVLIPKSISVAERVLVEELASLRSSGEDTPISSNNIGTPKGGVDDFKKRHPKRHSSMGSKQGSLWRSIRSFLRGGQSQEKFASISLDSSAASWRFGKSNSSNPNYFVFGFVMSCIIFYISRSYFALFNKRTLPSTHRTPSERTLKGRDFSV 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3946g00002 570 CDD DnaJ 85 138 IPR001623 -
Pral3946g00002 570 FunFam Molecular chaperone DnaJ 225 302 - -
Pral3946g00002 570 SUPERFAMILY Chaperone J-domain 80 191 IPR036869 -
Pral3946g00002 570 Gene3D - 233 297 - -
Pral3946g00002 570 MobiDBLite consensus disorder prediction 446 479 - -
Pral3946g00002 570 SUPERFAMILY HSP40/DnaJ peptide-binding domain 351 432 IPR008971 GO:0006457|GO:0051082
Pral3946g00002 570 SUPERFAMILY HSP40/DnaJ peptide-binding domain 200 344 IPR008971 GO:0006457|GO:0051082
Pral3946g00002 570 SMART dnaj_3 84 141 IPR001623 -
Pral3946g00002 570 Gene3D - 203 339 - -
Pral3946g00002 570 PRINTS DnaJ domain signature 87 105 IPR001623 -
Pral3946g00002 570 PRINTS DnaJ domain signature 105 120 IPR001623 -
Pral3946g00002 570 PRINTS DnaJ domain signature 141 160 IPR001623 -
Pral3946g00002 570 PRINTS DnaJ domain signature 121 141 IPR001623 -
Pral3946g00002 570 Gene3D DnaJ domain 82 184 IPR036869 -
Pral3946g00002 570 Hamap Chaperone protein DnaJ [dnaJ]. 82 468 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pral3946g00002 570 CDD DnaJ_zf 233 297 IPR001305 GO:0031072|GO:0051082
Pral3946g00002 570 CDD DnaJ_C 205 427 - -
Pral3946g00002 570 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 51 445 - -
Pral3946g00002 570 Pfam DnaJ domain 85 146 IPR001623 -
Pral3946g00002 570 Pfam DnaJ central domain 233 297 IPR001305 GO:0031072|GO:0051082
Pral3946g00002 570 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 220 300 IPR036410 -
Pral3946g00002 570 ProSitePatterns Nt-dnaJ domain signature. 126 145 IPR018253 -
Pral3946g00002 570 Gene3D - 350 441 - -
Pral3946g00002 570 ProSiteProfiles dnaJ domain profile. 85 149 IPR001623 -
Pral3946g00002 570 FunFam Chaperone protein dnaJ A6 chloroplastic 82 188 - -
Pral3946g00002 570 ProSiteProfiles Zinc finger CR-type profile. 220 302 IPR001305 GO:0031072|GO:0051082
Pral3946g00002 570 Pfam DnaJ C terminal domain 206 424 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3946g00002 Pral-Chr3946 19035 27769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3946g00002 86 146 C2H2 Transcription Factor Family AT1G74250 46.269 3.98e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3946g00002 K03686 - gmx:100782135 662.914