LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3935g00012	ATGGCTTTTGCCCCCACGTCTCATCCATATCCTCCCACAAACCTTCAAGTTATCCTTTTTCTGTGGGTAAGCATACTTTGGCTCCCAAGTATGAAAGCTACTACATCTGCATTAGGAAATGAGACTGATTATATGGCATTGCTCAAGTTTAAGGAATCAATAACCAATGATCCATATAAAGTCTTGAGCTCTTGGAATGGTTCAAATCACTTCTGCAACTGCTTCCATGGAGAAATCCCACCACAATTAGGTCGTTTATTCAGGCTGCAAAAACTCCCTCTCACAGATAATACATTGAGAGGACAAATTCCCTTCAACCTGACAAACTGCTATGAGCTCAGGCACTTGAATTTGTCAAGCAATAATCTTACTGGTAAAATGCCACTCGAGCTTGGCTCTCTCAGGAAGCTTGAAAAGCTGTACTTATATGAAAACAAATTAACTGGAGAAATCCCAGCTTCCGTTTGGAATCTTTCCTCCCTTGAGTATCTTTCAATGGCTTATAACAACTTGGAGGGAAGCATACCAGAAGAAATAGGGCATTTGACCAGCTTGAGGGTTTTCGCAGTAGTGGAGAACAAATTTGCTGGTATGCTTCCTTCTTCACTTTACAACATGTCATCCCTCTCATTCATATCTGCAGCAAAAAACCAGCTGACTCGAGCTCGACTTCCAGACAACATGTTCACCACCCTCCCTGATTTGAAATATTTTGCCATAGCTGACAATCAAATATCAGGAAACAATGTTACTGGTTCTATACCCTTGCAACTTTTTACTCTTTCCTCCTTGTCCATGTCGCTGATCTTTTCCCACAACTCCTTAAATGGACCTCTTCCTATTGAGGCTGGAAGACTTAAAAATCTTGGCACTTTTGATATCTCCGAAAATCATCTTTCTGATGAAGTACCGACAGATGGGGTTTTCAAGAATGCAAGTGCCATATCTGTTGCGGGTAATTCTAAGTTTTGTGGGGGTATTTCTGAGCTGAATTTATCACCATGCCCCATGAAAATTAGGACAAACAATAAGCATCATCATTTGAAGCTCTTAATAATTTTTGTTTGTGTTTCTATTTGTCTGGTCTTATCATCTATATTTGCAATCTACTGGTGGAGGAAACGAAACAGGACATCGTCTTCAACTTCACCAACAATTAACCAGCTTCCCAAGATGTCATACCAGAGCCTACACTCCGCAACGGAAGGGTTCTCTGCCAACAACTTAATTGGATATGGAAGTTCGGGGTTTGTGTATAGAGGAAAGCTGCAATCAGAGGACAAAGTTGTTGCTATAAAAGTCCTAAACCTTCAAAAGAGGGGAGCTAACAAGAGTTTCATTGCTGAATGTAATGCACTTGAAAATATTAGGCATCGAAATTTGGTGAAGATTTTAACATGTTGCTGCAGCATTGATCATAAAGGACAAGAATTTAAGGCACTTATCTTTGAGTACATGTCAAATGGAAGCTTGGAAAATTGGTTGCATCCTAGTACAGAAAGCATAAATCAGCCCAGAGCTTGGAATTTCGCCCAAAGATTAAATATTTCAAATGATGTTGCTTGTGCACTACATTATCTTCACTATGAATGTGAACAGACTATAGTCCATTGTGATTTAAAGCGAAGCAATATTCCTCTTGATGATGAAACAATTGCTCATTTAAGTGACTTTGGGTTAGCAAGAGTTCTTTCAATCCTTAATGGGAGCTCTCAAAAGCAAACCAGCACATCTGTCTTGAAGGGGACTATTGGCTATGCTCCTCCTGATATGATTCATTGTTCTGAGGTATCAACACAGGGTGATGTTTATTCCTTTGGGATTTTAGTTTTGGAAATGCTTACTGGCAAAAGACCCACTGAAGAAATGTTCAAAGATGGTCACAATCTCCATAACTATGTGAGAACTGCATACCCAGACAACCTCTTGGACATTGCGGACTCAGATCTTCTACCGATACAAATGATGCAGAATGTAAGAGGAAGATCTTCTACCGATACAAATGACGCAGAATGTAAGAGGAAGATCAGAGGAAATCCATATGGAGAACCATGCCCTGATGCACTCTAA	2070	0.4	MAFAPTSHPYPPTNLQVILFLWVSILWLPSMKATTSALGNETDYMALLKFKESITNDPYKVLSSWNGSNHFCNCFHGEIPPQLGRLFRLQKLPLTDNTLRGQIPFNLTNCYELRHLNLSSNNLTGKMPLELGSLRKLEKLYLYENKLTGEIPASVWNLSSLEYLSMAYNNLEGSIPEEIGHLTSLRVFAVVENKFAGMLPSSLYNMSSLSFISAAKNQLTRARLPDNMFTTLPDLKYFAIADNQISGNNVTGSIPLQLFTLSSLSMSLIFSHNSLNGPLPIEAGRLKNLGTFDISENHLSDEVPTDGVFKNASAISVAGNSKFCGGISELNLSPCPMKIRTNNKHHHLKLLIIFVCVSICLVLSSIFAIYWWRKRNRTSSSTSPTINQLPKMSYQSLHSATEGFSANNLIGYGSSGFVYRGKLQSEDKVVAIKVLNLQKRGANKSFIAECNALENIRHRNLVKILTCCCSIDHKGQEFKALIFEYMSNGSLENWLHPSTESINQPRAWNFAQRLNISNDVACALHYLHYECEQTIVHCDLKRSNIPLDDETIAHLSDFGLARVLSILNGSSQKQTSTSVLKGTIGYAPPDMIHCSEVSTQGDVYSFGILVLEMLTGKRPTEEMFKDGHNLHNYVRTAYPDNLLDIADSDLLPIQMMQNVRGRSSTDTNDAECKRKIRGNPYGEPCPDAL	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3935g00012	689	ProSiteProfiles	Protein kinase domain profile.	404	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3935g00012	689	Gene3D	Ribonuclease Inhibitor	42	130	IPR032675	-
	Pral3935g00012	689	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	73	638	-	-
	Pral3935g00012	689	SUPERFAMILY	L domain-like	40	325	-	-
	Pral3935g00012	689	Gene3D	Phosphorylase Kinase; domain 1	366	485	-	-
	Pral3935g00012	689	FunFam	Leucine-rich repeat receptor protein kinase EMS1	68	152	-	-
	Pral3935g00012	689	SMART	serkin_6	404	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3935g00012	689	Gene3D	Ribonuclease Inhibitor	131	245	IPR032675	-
	Pral3935g00012	689	Pfam	Leucine rich repeat N-terminal domain	41	73	IPR013210	-
	Pral3935g00012	689	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	375	485	-	-
	Pral3935g00012	689	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	486	676	-	-
	Pral3935g00012	689	MobiDBLite	consensus disorder prediction	666	680	-	-
	Pral3935g00012	689	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	153	248	-	-
	Pral3935g00012	689	Gene3D	Transferase(Phosphotransferase) domain 1	486	669	-	-
	Pral3935g00012	689	SUPERFAMILY	Protein kinase-like (PK-like)	377	640	IPR011009	-
	Pral3935g00012	689	MobiDBLite	consensus disorder prediction	660	689	-	-
	Pral3935g00012	689	ProSitePatterns	Protein kinases ATP-binding region signature.	410	433	IPR017441	GO:0005524
	Pral3935g00012	689	Gene3D	Ribonuclease Inhibitor	246	336	IPR032675	-
	Pral3935g00012	689	Pfam	Protein kinase domain	406	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3935g00012	Pral-Chr3935	101216	104338	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3935g00012	73	655	Receptor kinase-like Gene Family	AT3G47570	41.275	5.84e-139	431

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Pral3935g00012		Pkinase	1.7e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3935g00012	-		-	qsa:O6P43_025027	581.252