Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3931g00011 ATGCCTCTGGCAGTGATGGATATGGAGAGATCAGAATTCAGAGGAGAAGTCCTAAGTACTCACTTGTATGAATTCTTCACTTTACAAGTTCGGTTTCTCGCCGTGATTTTCTCAGGAACTGCAGATTCCGATCAATTTCTTGGGAAACTGAGAATGGAAGGTCGCCGGAGAATGACTCTTTATGATCAAATGTCTGCCGTCGACGGCCGCCGAGACTCGCTTGCGGGCTCGACCCTCGAAGCCGTGATGGCAAGCCACAAGATAGCCTCCGAGTCGAGCCGCCGCCAGTTCAGCGGCAGCCGAACCCTCTCTGACATCATTCGAGAAGACAATTCCAACACGAAGGACAAGAAATCTTGGAAAATCTTCAAAGACAAGCTCTGGCTCAAGCGCGCCGGATCTGCTTGGTTCTCCACAATCAACATCCCGGCCTTGGATATCTCTATCCCTAACCGGAATAACAACAACTCCGACGCCCCGTCAACAAGTAACCCACCTGACTTCTCAGGTCAGATCTTAGCCAGAGCTCGATCTTCCCTCAACGACGTCTTCTCCAGCGAGTCGAGGCCCCAAACCTCGCGCTCCGATTCCTTCCGTCGAGACGGCACGGTAACTTTCCGGGACTGCCTAGACAGCGACGGCGACGGATCCGAGTGCGACGACTGGGATCCCGCGCGTGAAGGCACGCGCCGCCTATCAACAATTCTATCAGAGGAGAGGGCATTGTCTGCGAGAGAAGCTGAGACAGCCGCCGCGGCATCTTCGGCGGCGGTGGCGGCACAGGGGGTAGACGAGCCGGTGAGGATGTCGCTGACGCTGATGGATTTACTGGAGGAGACAGATAGGCAAATGGGGTTTGATGCATCACGATACAGAACAGGATACGAAGATGACGACGAAGAAGTATATCAGAGGATAAAAATGGTGGAAAAGGAAGAAGAAGAAGAAGCTGAAGAAGAAGAGGAAGAAGAAAGCAAACGATGGAGCATACAGGAAAATTGTTGTGTGTGTATGGTGAGGCACAAAGGAGCAGCGTTTATACCATGTGGACACACATTTTGCAGGCAGTGTTCGAGGGAGCTTTGGGTGAGCAGAGGCCACTGTCCACTCTGCAACAATGTTATTCTGGAGATTCTTGACTTGTTCTGA 1149 0.5213 MPLAVMDMERSEFRGEVLSTHLYEFFTLQVRFLAVIFSGTADSDQFLGKLRMEGRRRMTLYDQMSAVDGRRDSLAGSTLEAVMASHKIASESSRRQFSGSRTLSDIIREDNSNTKDKKSWKIFKDKLWLKRAGSAWFSTINIPALDISIPNRNNNNSDAPSTSNPPDFSGQILARARSSLNDVFSSESRPQTSRSDSFRRDGTVTFRDCLDSDGDGSECDDWDPAREGTRRLSTILSEERALSAREAETAAAASSAAVAAQGVDEPVRMSLTLMDLLEETDRQMGFDASRYRTGYEDDDEEVYQRIKMVEKEEEEEAEEEEEEESKRWSIQENCCVCMVRHKGAAFIPCGHTFCRQCSRELWVSRGHCPLCNNVILEILDLF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3931g00011 382 Coils Coil 303 331 - -
Pral3931g00011 382 SUPERFAMILY RING/U-box 333 378 - -
Pral3931g00011 382 PANTHER OS01G0917900 PROTEIN 56 382 - -
Pral3931g00011 382 Pfam Zinc finger, C3HC4 type (RING finger) 331 376 - -
Pral3931g00011 382 SMART ring_2 334 371 IPR001841 -
Pral3931g00011 382 CDD RING-HC 334 371 - -
Pral3931g00011 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 382 IPR013083 -
Pral3931g00011 382 ProSiteProfiles Zinc finger RING-type profile. 334 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3931g00011 Pral-Chr3931 64652 68866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3931g00011 50 382 C3H Transcription Factor Family AT3G25030 36.550 1.65e-52 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3931g00011 - - pcin:129290516 526.168