LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3928g00017	ATGGCTCCACAGCCGGTGGATCACAAATGCGAGTCCACGGCCGGTGAGTCTCAGAGATCTATTCCGACCCCTTTTTTAACGAAAACTTATCAACTTGTTGACGATCATACCATAGACGATGTCATATCGTGGAACGAAGATGGAACCAGTTTCGTCGTTTGGAATCCGACGGTTTTCGCCAGAGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTTGTTCGCCAACTTAACACATATGGTTTCAGAAAAGTGGTACCCGATCGGTGGGAATTCACGAACGAGTGTTTTCGCAGAGGCAAGAAACAACTTCTGTGCGAGATTCAGCGTCGGAAAATCTCATCGCCTTCGACCACAGCGGCCGGTGCAACTGCGGTAGTGTCAGCCCCGACGGCGCCGCCGCCATTGACGGCAATACCAATCTCTAAGCCTATCATATCGCCTTCAAACTCAGGGGAAGAACAAGTCATTACTCCGAATTCATCGCCGACCGGAACTCCAGCTGAACTCATAACCGAGAACGAGAGGCTGAGAAAAGAAAACGTTCAGCTGACCAAGCAATTAACAGAGATGAGATCTCTGTGTAACAGCATATTCAATCTAATGTCGAAGTATGTATATAACCAAAATAGCAGTTTGCAAGGTAGAGCGGGTGACTTCGCCGCCGTGAAACCGCTCGACCTGATGCCGGTTGCGCGGAACGTCAGTGACGTGGAGGCGGTGGCGACGGTGGAAGACGAAATGAATCCAAAGCTGTTTGGGGTGGCGATCGGTGCGAAGCGATCACGGGAAGGCGGCGGCGGCGGAGGCGGATGCGATCCCGTGCTAAGCGTGCACAGAGCGGGGCCCGCAGAGATGAGATCAGAGCCGTTGGGTTGCCAAAGGCGGCGAGATAACCAGGAAGCGCCGTGGCTGAATCAGTGCCATAACGCGAATCAGAGAGTTTGTAATTAA	963	0.513	MAPQPVDHKCESTAGESQRSIPTPFLTKTYQLVDDHTIDDVISWNEDGTSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFTNECFRRGKKQLLCEIQRRKISSPSTTAAGATAVVSAPTAPPPLTAIPISKPIISPSNSGEEQVITPNSSPTGTPAELITENERLRKENVQLTKQLTEMRSLCNSIFNLMSKYVYNQNSSLQGRAGDFAAVKPLDLMPVARNVSDVEAVATVEDEMNPKLFGVAIGAKRSREGGGGGGGCDPVLSVHRAGPAEMRSEPLGCQRRRDNQEAPWLNQCHNANQRVCN	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3928g00017	320	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral3928g00017	320	MobiDBLite	consensus disorder prediction	152	171	-	-
	Pral3928g00017	320	FunFam	Heat stress transcription factor B-4	17	115	-	-
	Pral3928g00017	320	MobiDBLite	consensus disorder prediction	1	20	-	-
	Pral3928g00017	320	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	17	247	IPR027725	-
	Pral3928g00017	320	Gene3D	-	17	115	IPR036388	-
	Pral3928g00017	320	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral3928g00017	320	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral3928g00017	320	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral3928g00017	320	Coils	Coil	177	197	-	-
	Pral3928g00017	320	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Pral3928g00017	320	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral3928g00017	320	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3928g00017	Pral-Chr3928	218544	220133	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3928g00017	1	320	HSF	AT5G62020	45.104	4.23e-88	264

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pral3928g00017		HSF_DNA-bind	2.8e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3928g00017	K09419		-	gmx:100812267	390.963