Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3928g00010 ATGGAAAATGAAACCGGGGCCAAGATTCACATAAGAGGAAAAGGATGCTCGAAAACAACTAACATATCCACCTCTTCTAAAGAGGACTTGCATGTGTATATAGAAGCAGACAACAAAAGTTCTCTGGATGGAGCAGTTTCCATGGTTGAAAAATTGCTAATCCCAGTTGAAGGAAGAAATGAGCACAAGGAGGCTCAATTAAAGGAGCTGGCCATGCTGAAAGGAACAGCTAGGGATGAAAATATGTGCTATGTTTGCGGTGATGAGGGACATCTGTCATATGCCTGCCCTGACCTTCAATCAACTTTTAAAGTGAACTCATGCTATACATGTTTTAGTGCCAGTCCCTTGGATGTGCTATCACCACAGAATGACTCTGTGCAGGGTTCTGGGTTTGGTTTTAGTTTCGGTTCAACACAGAGCAGACAACGGAGGTATGGAAAGAAATCATTGATGAACAATGTTTATGTTGGCAATCTGCCTCAAGCGTTTGATGATAATAGATTGTCTGAGCTGTTTTCTCCATTTGGTAAGATCCTTGAAGTAAAAGCAATCAAGGATCGAACAACTGGAATTTGTAGAGGTTTTGGATTTGTTGAGTTTGACAGTGCCGCGGATGCACAAGTGGCTGTGACTCATATGAACGGTTTTAAAATGGATGGGAGGGTTTTGAAGGTGAGGATAGCTAGGCTTTTGTCAAATGCTGAAGTTTCAAGCTTGAACCTTTTTCCTCAGCGCTCTGGTTCTGCAGGAACATCCCAAAGTGTTAGAAGCCAAACAGATCGATCTGGTCCATCACATTTTATGCTGCCAGAACATCCAACTTCGCTTCACAACAGCAGTGGCATGAATCTTTTTTCATCCACTCTAAACTCACAGCATTGTGATCTTAAGAAGGATCGAAGCCTTTCCCCTCTAAGCTACTATTCAAGCCCTTCTGATTTTAGTAATTCTGGCAAAATGCATTTTTCATGCAACTTTTCAGATCAAAGTGTTTCGTTATCTGGTGGTTCAATTCCACAGAGTCCTGGCTCCCAACATCGGTCATATTTTGTGACGCCGCCTCCCGATAGAGCTGCCCTGCCCAGTCTTGATCACAGATTAGAAGATGCGAATTCTTTCACTTCTTCATTGCAGAGATGGTATTACAGGGCACTTCATTGA 1164 0.4261 MENETGAKIHIRGKGCSKTTNISTSSKEDLHVYIEADNKSSLDGAVSMVEKLLIPVEGRNEHKEAQLKELAMLKGTARDENMCYVCGDEGHLSYACPDLQSTFKVNSCYTCFSASPLDVLSPQNDSVQGSGFGFSFGSTQSRQRRYGKKSLMNNVYVGNLPQAFDDNRLSELFSPFGKILEVKAIKDRTTGICRGFGFVEFDSAADAQVAVTHMNGFKMDGRVLKVRIARLLSNAEVSSLNLFPQRSGSAGTSQSVRSQTDRSGPSHFMLPEHPTSLHNSSGMNLFSSTLNSQHCDLKKDRSLSPLSYYSSPSDFSNSGKMHFSCNFSDQSVSLSGGSIPQSPGSQHRSYFVTPPPDRAALPSLDHRLEDANSFTSSLQRWYYRALH 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3928g00010 387 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 1 85 IPR036612 GO:0003723
Pral3928g00010 387 PANTHER RNA-BINDING PROTEIN RELATED 1 274 IPR045071 -
Pral3928g00010 387 SMART rrm1_1 154 227 IPR000504 GO:0003723
Pral3928g00010 387 MobiDBLite consensus disorder prediction 243 265 - -
Pral3928g00010 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 225 IPR000504 GO:0003723
Pral3928g00010 387 Gene3D K Homology domain, type 1 1 80 IPR036612 GO:0003723
Pral3928g00010 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 231 IPR000504 GO:0003723
Pral3928g00010 387 SUPERFAMILY Retrovirus zinc finger-like domains 77 112 IPR036875 GO:0003676|GO:0008270
Pral3928g00010 387 Gene3D - 137 267 IPR012677 -
Pral3928g00010 387 Gene3D - 81 115 - -
Pral3928g00010 387 ProSiteProfiles Zinc finger CCHC-type profile. 83 98 IPR001878 GO:0003676|GO:0008270
Pral3928g00010 387 MobiDBLite consensus disorder prediction 243 274 - -
Pral3928g00010 387 SUPERFAMILY RNA-binding domain, RBD 137 231 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3928g00010 Pral-Chr3928 158211 159445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3928g00010 82 229 Eukaryotic Initiation Factors Gene Family AT3G11400 32.298 3.09e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3928g00010 K13095 - pcin:129306904 535.413