Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3928g00009 ATGATTCAAGCCATTCGATTCCATTTTAGCCTACTCACATGGGTTCAACTGATTTCACTTATATTCGTGCTACGCGCCACCGCGCAATCCGCCGTGCAGCCGGTGCCGTCGTTCGCATCCCACCAGAACTGGGACCCTTCAATCGCTGCCATGGTGGGCGCCCTGTTCTGCGCCTTCCTATTCATGGGCTTCTTCTCCGTCTACCTCCGCCGTTGCTCTGACGAGGAAGCCGCCACCGTCCCAACGGGAGACTGGTCGTGCTCGTGCTCGGAGGGCATTGAACGGAAAGTCCTGGACACGCTCCCCATCCTTGTCTATTCCACCATTAAAGACCTCAAAATGGGTAAAGGAGCACTTGAATGTGCGGTGTGCTTGAACGAGTTCAAAGATTACGAAACTCTCCGGTTACTTCCCAAATGCAACCACGTTTTCCATCCTTCTTGTATCGAAGCCTGGCTCTCTTCTCACGTGACTTGTCCTGTTTGTCGGGAAAAGGTGAATCCAGATTACGATCAGGTGGCCATAACGGTTCCGCCGCAATTGAACGTTATCGAGAGCAATGATAATCGCAGAGACGAACATGAGGAAGATGAAAAAGATGAGGGTCCTGAAGGAAAAAGTGGTGCAAACAGCGGCGAGGTTGGGGACGTCGCGGTGGCCGTTGGAGGAGATCGATTGAGGTCGGGGAGGGTGAAGGAGTTGAGGAGGTCGAATTCAACGGGACATTGTGAGGTGGAGAGTTTTACGTTGAGGTTGCCGGAAGATGTTCGGAAGTATATTCTGTTGAACCATCATGGGTCGATGCGGCGGTCGGCGAGTTACAACGTGGGAGGGAGTCCGAGGAAAGGTTTGTGTCGGAATGAGACGCAGGTTATGAAGAAGGATAAGGAGGATCTTATTCATTCTCCGCCATTAGTTCCATGA 924 0.5216 MIQAIRFHFSLLTWVQLISLIFVLRATAQSAVQPVPSFASHQNWDPSIAAMVGALFCAFLFMGFFSVYLRRCSDEEAATVPTGDWSCSCSEGIERKVLDTLPILVYSTIKDLKMGKGALECAVCLNEFKDYETLRLLPKCNHVFHPSCIEAWLSSHVTCPVCREKVNPDYDQVAITVPPQLNVIESNDNRRDEHEEDEKDEGPEGKSGANSGEVGDVAVAVGGDRLRSGRVKELRRSNSTGHCEVESFTLRLPEDVRKYILLNHHGSMRRSASYNVGGSPRKGLCRNETQVMKKDKEDLIHSPPLVP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3928g00009 307 SMART ring_2 121 162 IPR001841 -
Pral3928g00009 307 MobiDBLite consensus disorder prediction 186 206 - -
Pral3928g00009 307 CDD RING-H2_EL5-like 120 163 - -
Pral3928g00009 307 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Pral3928g00009 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 171 IPR013083 -
Pral3928g00009 307 MobiDBLite consensus disorder prediction 181 216 - -
Pral3928g00009 307 PANTHER RING FINGER DOMAIN-CONTAINING 36 171 - -
Pral3928g00009 307 FunFam E3 ubiquitin-protein ligase ATL6 84 169 - -
Pral3928g00009 307 SUPERFAMILY RING/U-box 120 171 - -
Pral3928g00009 307 Pfam Ring finger domain 120 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3928g00009 Pral-Chr3928 135821 137530 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3928g00009 12 283 Rapid Response to Elicitors AT3G05200 35.714 1.47e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3928g00009 K10664 - gmx:100782532 226.868