Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3928g00006 ATGATCAAGAGAATCGCACTCTCACACATCCTCGTCTTCTTCCTTCTCTCGTCGGCAATCGACGCCCAGTCAAGTTCGCCACCGGCGGCGGCTTCTCCTAATGCCACACTCCCAAACAGGATCCCATCATTCGATCCCACTGTTGCAGCTCTTGTTTGCGTCTTCTTGTTTGTCGGCTGCTTCTCCATCTACCTCCGCCACTGCTCCAACATCTACGCCCGCCGGAGTGACAGAACCGCTAATTTTGACTCAACTGGACCTCAAGGTATCGACCCAAAATTACTCGACACCTTCCCAATCCTCCCGTGCTCCGCCGTTAAACAACTTAGATTTGGGAGTGCGACGCCGGACTGTGCCGTGTGCTTGGCCGAATTCGACCACCACGATAAGCTCCGATTGCTTCCGAAATGTAACCACGTGTTTCACTCTGAATGCATCGACGCGTGGTTGGCCTCCCACGTGACTTGCCCCGTGTGTCGCACGAGGTTGAAGCCGGCGGAGGAGCACCACCATGGTGAAAACGAAGTCGTGATAGTAATTCCGAATGAGGTTATAAATGAACGCCGCGTGTTCGATGGAAGTTCTGTAAGTGGAACGGAGGCTGATTTAGGAGACAGAAGAAGTTTGGGAAGGTGTCATTCAACGGGTCACTCTGTCGGATTGGGTGAAATCGGAATGAAGGACACGGAGAGGTATGATCTCAGGTCGGAGGATTTGAGGAAACAGATTGCGGTGCATCACGGCGGAATGCGGCGGTCGGTGAGCTACGATGTGTTCCGTTGA 783 0.5326 MIKRIALSHILVFFLLSSAIDAQSSSPPAAASPNATLPNRIPSFDPTVAALVCVFLFVGCFSIYLRHCSNIYARRSDRTANFDSTGPQGIDPKLLDTFPILPCSAVKQLRFGSATPDCAVCLAEFDHHDKLRLLPKCNHVFHSECIDAWLASHVTCPVCRTRLKPAEEHHHGENEVVIVIPNEVINERRVFDGSSVSGTEADLGDRRSLGRCHSTGHSVGLGEIGMKDTERYDLRSEDLRKQIAVHHGGMRRSVSYDVFR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3928g00006 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 166 IPR013083 -
Pral3928g00006 260 FunFam E3 ubiquitin-protein ligase ATL6 78 166 - -
Pral3928g00006 260 SUPERFAMILY RING/U-box 117 167 - -
Pral3928g00006 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 174 - -
Pral3928g00006 260 SMART ring_2 118 159 IPR001841 -
Pral3928g00006 260 Pfam Ring finger domain 117 160 IPR001841 -
Pral3928g00006 260 CDD RING-H2_EL5-like 117 160 - -
Pral3928g00006 260 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3928g00006 Pral-Chr3928 122068 123010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3928g00006 10 243 Rapid Response to Elicitors AT3G05200 38.403 4.13e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3928g00006 K10664 - pcin:129287042 289.656