Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3928g00001 ATGAACCTCGACGGCAGTACCGCCGGCTTCACCTTTGGCACTGTCTTCGTAATCATATCCATCTGTTTTGCCTGCATCCGCCTTCGCCGGCTTTCCAACAACCCTGTCAACACCTTTGGCACGGCGGAGCTCTCCTCCGGAGCAGAATATGGCCTCCACGACTCCATTATCAACAGCTTTCCCAAGCTATCCTACTCTGAGATGAGGAAAAGCTCTTATAATAATAATCCCAACAATATTGAAGATCCTTCTAGTTCTTCTTCGTGTTCCATCTGCTTGGCAGATTACAAAGAAGAAGACATGTTAAGGTTGCTTCCTCGTTGTGGCCATCTTTATCATCTTCACTGTGTTGATCCATGGCTCAAGTTACACAACACTTGCCCTATCTGTCGAATTCCACCAACCTCCTCTTGTGTTGGAGATCACGATGATCGGTCTAATGACTCCATCTAG 453 0.4702 MNLDGSTAGFTFGTVFVIISICFACIRLRRLSNNPVNTFGTAELSSGAEYGLHDSIINSFPKLSYSEMRKSSYNNNPNNIEDPSSSSSCSICLADYKEEDMLRLLPRCGHLYHLHCVDPWLKLHNTCPICRIPPTSSCVGDHDDRSNDSI 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3928g00001 150 SMART ring_2 89 130 IPR001841 -
Pral3928g00001 150 SUPERFAMILY RING/U-box 88 135 - -
Pral3928g00001 150 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Pral3928g00001 150 CDD RING-H2_PA-TM-RING 91 131 - -
Pral3928g00001 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 135 IPR013083 -
Pral3928g00001 150 Pfam Ring finger domain 88 131 IPR001841 -
Pral3928g00001 150 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 137 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3928g00001 Pral-Chr3928 10106 10558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3928g00001 51 137 C3H Transcription Factor Family AT5G06490 54.023 6.86e-27 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3928g00001 - - pcin:129319166 177.178