Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3921g00010 ATGCAGAGTCAGCTTGTGTGTAGTGGGTGCAGGAGCGTTTTGCTTTACCCTAGGGGAGCCACTAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTTCACCTGGGATGGAAATGTCTCAACTTTATTGTGGAGGATGTAGGACATTGCTGATGTACACACGTGGAGCTACAAGTGTTAGATGCTCTTGCTGTCATACGGTGAACCTTGCACCAGCATCTAGCCACTTTGCCCATATACACTGTGGGAACTGTCGGACAACTTTAATGTATCCATATGGAGCTCCATCAGTCAAATGCGCAATTTGCCAGTATATCACAGATACCAGTAGGACCAATGGAAGAGTTCCCAATACTGTCCACAGACCACATGGAACAACCAACTCTGGAACAGTACCTTCTACTTCAACATCAATGCTCCCTTCTCAAGGCCAAACTGTTGTGGTCGAAAATCCTATGTCTGTTGATGCAAGTGGGAAATTGGTAAGCAATGTTGTTGTTGGCGTAACAACAGACAGGAAGTAA 531 0.452 MQSQLVCSGCRSVLLYPRGATNVCCALCNTITSVPSPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPASSHFAHIHCGNCRTTLMYPYGAPSVKCAICQYITDTSRTNGRVPNTVHRPHGTTNSGTVPSTSTSMLPSQGQTVVVENPMSVDASGKLVSNVVVGVTTDRK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3921g00010 176 PANTHER PROTEIN LSD1 2 174 IPR040319 -
Pral3921g00010 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Pral3921g00010 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Pral3921g00010 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Pral3921g00010 176 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Pral3921g00010 176 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Pral3921g00010 176 NCBIfam zinc finger domain, LSD1 subclass 81 109 IPR005735 -
Pral3921g00010 176 MobiDBLite consensus disorder prediction 116 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3921g00010 Pral-Chr3921 453115 466442 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pral3921g00010 zf-LSD1 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3921g00010 - K12191 gmx:100776394 316.62