Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3916g00029 ATGGCTCAGCGACGAGCTGGCTCATCCTCTCACCTCACTTACAGATGGACTTATGATGTGTTCCTTAGCTTTCGAGGGGAGGATACTCGCTTGAATTTCGTTGGCCATCTCTACGATTCTCTGCATCGAAGCGGAATCCATGCCTTTATCGATGATGAATCCCTGCAGGCTGGGGAAGAGATCAGAGCATCTCTTTTGAAAGCCATACGAGAATCCAGGATAGCCATCATAGTTTTTTCTGAGAACTATGCTTCATCAACATTTTGTTTGGATGAACTTGCTGAGATTGTAGAGTGCTTTAAAGGAGAAGGTCGGCTAGTGTATCCAGTGTTCTATTACGTGGATCCTTCAGAGGTGAGACATCAGAGAGGTAGCTATGGAGAATCATTAGTTTATCTGCAGAAAAGATTGGAGAAGGAGGAGGATAAGCTGCAAAAGTGGAGGTTGGCTTTGTCTCAAGTAGCTAACTTGTCCGGTTGGCATCTCAAACCTAGGATTGCAAAAGAACAAGAATATATTAGAAGGATCACTTGTGAAGTCTCTGCAAAAATCAATCGCAAACCGTTACATGTTACCAATTATCCAGTTGGACTTGTGCCCCGGGTGCAGGAAGTAATGTCACTTTTAGATCTTTGGTCCAATAAAGAAGTCAACATGGTTGGAATTTGTGGCATTGGCGGATTAGGCAAATCAACTATTGCAAGGGCTGTGTATAACTCAATTGCTGATCATTTTGATGGTTTATGTTTTCTTTCTAATGTTAGAGAAACCTCGAACAAGTATGGCTTGCCACATCTTCAAGAGACACTATTATGCAAATTAGTCAGTGAGAAATATCTTAAATTGGGAGATATCTATGAAGGAATTTCAATCATAGAACATAGGCTTTGTCAAAAGAAGATCCTTTTAGTTATTGATGATGTTGACAAATTGGAGCAACTACAAGTTCTAGCTGGAAGTTGTGATTGGTTTGGTTTTGGAAGTAGAATCATAATTACGACTAGAAATAAGCATTTGTTGGTATGTCATGGAGTTGAAAGAATTTATGAAGTCAAAAAATTAAATAATGAAGAAGCTCTTCAGCTGTTCAGTTGGAATGCCTTGAAAAAGGAAAATATGGATTCTAGTTACCTTGATATTTCAAGTCATGCAATACTTTATTCACGTGGCCTTCCACTAGCCTTGGAAGTAATTGGCTCTGCTTTATGTGGAAAAAGGACTGATGAATGGAAATATGCATTTGATAAATACCAAAAAATACCAAATAAACAAGTTTTTGAAGTCTTGAAATTAAGCTTTGATGCTTTAGAGGATAGAGAGAAGGAGATTTTCCTTGACTTGGCATGCTTTTTCAAAGGTGAAAAGTTAGATGTCATAAAAACATTGCTTAATTTTCGAGGAGTTCATCCAGAGTATATTATTGGGGTACTTACGGATAAATCCCTTGTGAAGGTTGAAGAAAATCGTGTGACAATGCATGACATGATAGAAGATATGGGCAAAGAAATTGTTCGGCAAAAGTCACCAAAGGAGCCTGGAAAACGGGATAGATTATGGTTCTATGATGACATTCTTCATGTTTTACAAGAAAATACAGGATCTGATGAGATTGAAACTATAATGTTGGACTTACCTGAAGATAAAGAAGTTCAATGGAATGGAGAGGCATTTAAGCACATGAAAAACCTCAAAATGCTTGTGATTAAAAATGCAAACTTTTCTAGAAGTCCTGAATACCTCCCAAACACTTTAAGTGTATTGGAATGGAAGGGGTATCCTTCTAAATTTTTGCCATCTAATTTCCATCCAACAAAGCTCATCCATCTTGACCTATCCAATAGTTCTATTGAATTACTCCAACCGCTTCATAGGGTATGTGTATGA 1884 0.3795 MAQRRAGSSSHLTYRWTYDVFLSFRGEDTRLNFVGHLYDSLHRSGIHAFIDDESLQAGEEIRASLLKAIRESRIAIIVFSENYASSTFCLDELAEIVECFKGEGRLVYPVFYYVDPSEVRHQRGSYGESLVYLQKRLEKEEDKLQKWRLALSQVANLSGWHLKPRIAKEQEYIRRITCEVSAKINRKPLHVTNYPVGLVPRVQEVMSLLDLWSNKEVNMVGICGIGGLGKSTIARAVYNSIADHFDGLCFLSNVRETSNKYGLPHLQETLLCKLVSEKYLKLGDIYEGISIIEHRLCQKKILLVIDDVDKLEQLQVLAGSCDWFGFGSRIIITTRNKHLLVCHGVERIYEVKKLNNEEALQLFSWNALKKENMDSSYLDISSHAILYSRGLPLALEVIGSALCGKRTDEWKYAFDKYQKIPNKQVFEVLKLSFDALEDREKEIFLDLACFFKGEKLDVIKTLLNFRGVHPEYIIGVLTDKSLVKVEENRVTMHDMIEDMGKEIVRQKSPKEPGKRDRLWFYDDILHVLQENTGSDEIETIMLDLPEDKEVQWNGEAFKHMKNLKMLVIKNANFSRSPEYLPNTLSVLEWKGYPSKFLPSNFHPTKLIHLDLSNSSIELLQPLHRVCV 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3916g00029 627 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Pral3916g00029 627 Pfam NB-ARC domain 205 425 IPR002182 GO:0043531
Pral3916g00029 627 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Pral3916g00029 627 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Pral3916g00029 627 Gene3D - 353 437 IPR042197 -
Pral3916g00029 627 Gene3D - 186 346 IPR027417 -
Pral3916g00029 627 Gene3D - 14 185 IPR035897 -
Pral3916g00029 627 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 619 IPR044974 GO:0006952
Pral3916g00029 627 SMART till_3 17 157 IPR000157 GO:0007165
Pral3916g00029 627 Pfam TIR domain 18 183 IPR000157 GO:0007165
Pral3916g00029 627 SUPERFAMILY "Winged helix" DNA-binding domain 424 529 IPR036390 -
Pral3916g00029 627 SUPERFAMILY L domain-like 539 622 - -
Pral3916g00029 627 Coils Coil 130 157 - -
Pral3916g00029 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 447 IPR027417 -
Pral3916g00029 627 PRINTS Disease resistance protein signature 219 234 - -
Pral3916g00029 627 PRINTS Disease resistance protein signature 558 574 - -
Pral3916g00029 627 PRINTS Disease resistance protein signature 388 402 - -
Pral3916g00029 627 PRINTS Disease resistance protein signature 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3916g00029 Pral-Chr3916 447854 460855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3916g00029 216 619 WRKY Transcription Factor Family AT5G45050 34.873 4.09e-69 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3916g00029 - - pcin:129295352 907.131