Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3916g00006 ATGACGGACGGAATCACACTCTCAAACATTCTCGTCTTCTTCCTTCTTTCGTCGGCCGCCGTTGAAGCCAAGTCAGATTGGCAACTAGCTCCTTCTCATCCTCATTTTTCAGGAATCCCCAGCTGGGACCCATCATTCACTCCCGTGGTTGTGGCCCTCGGCTGCTCCTTCTTGTTCGTTGTATTCTTCTCCATCTACCTCAGACACTGCTCCGACGCCGACCTAGTGGCGGCCACTGGCATCGCTGCCCATTGTTCTTCCTCCAGTTCTCAAGGCATCGACCCTAAATTACTTAACACCTTCCCCATCCTCGTCTATTCCAACATCAAACACCTCAGGCTTGATAGTGCAGCTCTGGAGTGTGCCGTGTGCTTGAGCGAGTTCGATCACCACGACTCGCTCCGATTGCTTCCGATATGTAACCACGTGTTTCACCCTCAATGCATCGATGCCTGGTTAGGCTCCCATGTGACTTGCCCAGTTTGTCGCACAAGGCTGACGCCGGAGCACCATGGTGGTGACAAGGACGGCGATGATGTTGTGATCGTAATTCAGGATCCGGTAAATGCACAACATGAGTTCGATGAAAGTTCTGCGAGTAGAAGAACGGAGCTTAATAATTCAGGAGAAAGAAGAACCAGGTTGGGAAGGTGTCATTCCACGGGTCACTCTCTGCTGAGTTTGGTTGAAACAGCAGGGAAGGACACGGAGAGGTATACTCTGAGGTTGTCGGAGGATGTGAGGAAGCTAGTTCTGACGAATCACGGAGGAATACGGCGGTCCATGAGCTACAATGTGTTCGCGCCACCGGGACGACCATGTGAAGGAAGCAGTAGAGAACGATTTATATATTGA 855 0.5135 MTDGITLSNILVFFLLSSAAVEAKSDWQLAPSHPHFSGIPSWDPSFTPVVVALGCSFLFVVFFSIYLRHCSDADLVAATGIAAHCSSSSSQGIDPKLLNTFPILVYSNIKHLRLDSAALECAVCLSEFDHHDSLRLLPICNHVFHPQCIDAWLGSHVTCPVCRTRLTPEHHGGDKDGDDVVIVIQDPVNAQHEFDESSASRRTELNNSGERRTRLGRCHSTGHSLLSLVETAGKDTERYTLRLSEDVRKLVLTNHGGIRRSMSYNVFAPPGRPCEGSSRERFIY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3916g00006 284 Pfam Ring finger domain 120 163 IPR001841 -
Pral3916g00006 284 CDD RING-H2_EL5-like 120 163 - -
Pral3916g00006 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 169 IPR013083 -
Pral3916g00006 284 PANTHER RING FINGER DOMAIN-CONTAINING 40 166 - -
Pral3916g00006 284 SMART ring_2 121 162 IPR001841 -
Pral3916g00006 284 MobiDBLite consensus disorder prediction 195 213 - -
Pral3916g00006 284 SUPERFAMILY RING/U-box 120 169 - -
Pral3916g00006 284 MobiDBLite consensus disorder prediction 193 213 - -
Pral3916g00006 284 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Pral3916g00006 284 FunFam E3 ubiquitin-protein ligase ATL6 82 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3916g00006 Pral-Chr3916 85308 86162 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3916g00006 11 280 Rapid Response to Elicitors AT3G05200 39.100 8.38e-51 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3916g00006 K10664 - pcin:129287042 224.172