Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3916g00001 ATGTTTGCGCCGTCTTCGTTCATTGTCAGCTTTGCCCTCTCCCTCCGCCACTGCTCCGACGTGGATCTGGCTGCTGCCGACAATTGTTCTTCAAGTGGTCCTCAAGGTATTGACCCAAAAATTACTCGACCACCTTCCCCATCCTCGTGTATTCCGCGCGTGAAGAGCCTCAAATTTGGGAAAGCCGCCGCGCTGGAGTGTGCCGTGTGCTTGAGCGAGTTCGACCAACAAGATACGCTCCGATTACTTCCGAAATGTAACCATGTGTTTCATCCTCAATGCATCGACGCCTGGTTGGCCTCCCACGTGACTTGCCCTGTTTGCCGTTCAAGGCTGAAGCCGGCGGAGGAGCACCGGCGAGGGGAAAACGACGTAGCGATCGAAATTCCGAATGAGGTTATACATGCCCCACAGGTGTTGGATGAAAGTTCTGGGAGTAGAAAGGAGCGTCATTCAGGAGATAGAAGAGTATGGGGGGGCAAGGACACGGAGAGGTACAATCTCAGATTGTTGGAGGATCTTAGGAAACAGATTACTGTGAGTCACGGAGGAATGCGACGGTCGGCGAGCTGCAATGTGCTCCGCAGACGGCGGGGTGAAGAGAACAGACAGAATAGTGAGTGTTGA 627 0.5359 MFAPSSFIVSFALSLRHCSDVDLAAADNCSSSGPQGIDPKITRPPSPSSCIPRVKSLKFGKAAALECAVCLSEFDQQDTLRLLPKCNHVFHPQCIDAWLASHVTCPVCRSRLKPAEEHRRGENDVAIEIPNEVIHAPQVLDESSGSRKERHSGDRRVWGGKDTERYNLRLLEDLRKQITVSHGGMRRSASCNVLRRRRGEENRQNSEC 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3916g00001 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 116 IPR013083 -
Pral3916g00001 208 SMART ring_2 67 108 IPR001841 -
Pral3916g00001 208 MobiDBLite consensus disorder prediction 138 158 - -
Pral3916g00001 208 CDD RING-H2_EL5-like 66 109 - -
Pral3916g00001 208 Pfam Ring finger domain 66 109 IPR001841 -
Pral3916g00001 208 SUPERFAMILY RING/U-box 62 115 - -
Pral3916g00001 208 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Pral3916g00001 208 MobiDBLite consensus disorder prediction 142 158 - -
Pral3916g00001 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 35 184 - -
Pral3916g00001 208 FunFam E3 ubiquitin-protein ligase ATL6 25 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3916g00001 Pral-Chr3916 2247 2873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3916g00001 1 200 Rapid Response to Elicitors AT3G05200 35.950 1.00e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3916g00001 K10664 - pcin:129287042 169.859