Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3915g00002 ATGATGAAGACGATCACACCCTCACCCATCCTCGTCTTCTGGCTTCTCTCTTCCACCGTCGATGCTCAGTCAAGTTGGGGACCGGTGGTTTCTCCAAATGCCCCCCTTCACACTTGGGATGTATCATTCGCTCCCATGATTGTGGCCCATGTTTGCGCCGTCTTCTTCATTGTCAGCTTTGCCCTCTCCCTCCGCCACTGCTCCGACGTGGATCTGGCTGCTGCCGACAATTGTTCTTCAAGTGGTCCTCAAGGTATTGACCCAAAATTACTCGACACCTTCCCCATCCTCGTGTATTCCGCCGTGAAGAGCCTCAAATTTGGGAAAGCCGCCGCGCTGGAGTGTGCCGTGTGCTTGAGCGAGTTCGACCAACAAGATACGCTCCGATTACTTCCGAAATGTAACCATGTGTTTCATCCTCAATGCATCGACGCCTGGTTGGCCTCCCACGTGACTTGCCCTGTTTGCCGTTCAAGGCTGAAGCCGGCGGAGGAGCACCGGCGAGGGGAAAACGACGTAGCGATCGAAATTCCGAATGAGGTTATACATGCCCCACAGGTGTTGGATGAAAGTTCTGGGAGTAGAACGGAGCGTCATTCAGGAGATAGAAGAGGTATGGGGGGGCAAGGACACGGAGAGGTACAATCTCAGATTGTTGGAGGATCTTAG 669 0.5366 MMKTITPSPILVFWLLSSTVDAQSSWGPVVSPNAPLHTWDVSFAPMIVAHVCAVFFIVSFALSLRHCSDVDLAAADNCSSSGPQGIDPKLLDTFPILVYSAVKSLKFGKAAALECAVCLSEFDQQDTLRLLPKCNHVFHPQCIDAWLASHVTCPVCRSRLKPAEEHRRGENDVAIEIPNEVIHAPQVLDESSGSRTERHSGDRRGMGGQGHGEVQSQIVGGS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3915g00002 222 MobiDBLite consensus disorder prediction 186 222 - -
Pral3915g00002 222 CDD RING-H2_EL5-like 114 157 - -
Pral3915g00002 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 166 IPR013083 -
Pral3915g00002 222 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pral3915g00002 222 MobiDBLite consensus disorder prediction 192 206 - -
Pral3915g00002 222 SMART ring_2 115 156 IPR001841 -
Pral3915g00002 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 41 168 - -
Pral3915g00002 222 FunFam E3 ubiquitin-protein ligase ATL6 74 163 - -
Pral3915g00002 222 SUPERFAMILY RING/U-box 114 163 - -
Pral3915g00002 222 Pfam Ring finger domain 114 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3915g00002 Pral-Chr3915 29386 30054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3915g00002 11 171 Rapid Response to Elicitors AT3G05200 44.253 1.56e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3915g00002 K10664 - pcin:129287042 171.785