LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3914g00019	ATGATTGCTTTCGTCGTCTTCTTCTTCTTCATCTTCATCTTCAGCACCACGCAATCAGCCGCCTCTGTATTCAACGATTTCAACTGCACAACCAATATCACCTTCACTCCTAACGGCACCTTCCAAAGCAACCTCGCCACCCTCCTCTCCTCTCTCTCCTCCAACGCCACCGGCGGCATCAGATTCTACAACACCACCGTCGGCGGCCGCGGCGGAGCAAACACCGTATACGGCCTCTTCGTGTGCCGCGGCGATGTGCCGTATCCATTGTGCAGCGAGTGCGTTAACTTCGCCACCCAGAGGATAAGCTCATCGTGTCCTTCAGCGAAAGAAGCCATTATTTGGTACAACGAGTGCTTGCTGCGATATTCTTCCAGGTCTATCTTCTCTTCCATGGAAGAATGGCCAAGATATCAAGTCAAGATTCCGTTAGGCGACCCTGGGCTTTTACGAACTCGGCGTTTCTACGATACTTTGGGATCTATTTTGAACGATCTGATAGATGGAGCAGCTCAGGCTCTTGGGAAATCTGATTCAAAGTTCGGTGTTCAGCAAGGTGACGCATCTGGAAACACAACGCTGTACGGCCTGGCTCAGTGCACGCCGGACTTAGCCACCGGCGACTGCAAGCGGTGTGTCAGGGATGCCATAGCGGAGATTACGACGTCGTGTTGCAGTGGCAGCATCGGACAAAGTGTGATGTTCCCCAGTTGCATTATTCGCTATGAAACATATCCATTTTATCAGCATGCCGGAACGTCGACACTCACGCCGGTGGCGGCGGCTAACGGAAAAAGCAATAAATTGCGGACACAAATTATTGCAATTATTGTCCCCTCCATTATTGTTCTAGTGGCGATTCTCGTTTTTTGCTTCTACATGGCGCCTAGAAGAAATTCAAATTCAAAGAAGAAATCACAAAAAGCCACTGATCTCTCAGAAAATTTTGGGGTTGAAATTATTACCACAATGGATTCGTTGCAAATTGACATAGCTACAATTAAAGTGGCTACGGACAATTTTTCTGAAAAAAGCAGGATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGGGGTTCTTCCTAATGGACAAGAGATAGCTGTGAAGCGATTGTCAAGAACTTCATCGCAGGGAGTTGAAGAATTCAAAAATGAGGTTTTGCTGATAGCTAAACTTCAACACAGAAATTTAGTAAGGTTACTGGGATTCTGCCTTGAAGATGATGAGAAGATACTTATCTATGAATATGTGCCTAACAAAAGCCTTAACCATTTCCTATTTGATCCTTTGAAGCAAAGGGAATTAACTTGGCCTGAACGTTTTAAGATTATAAAAGGAATTGCTCGAGGAATCCTATATTTACATGAAGACTCTCGTCTTAAGGTCATACATCGTGATCTTAAACCAAGTAATGTTTTGTTAGATAGTAACTTGAGTCCAAAAATCTCAGATTTTGGTATGGCAAGACTAATAACACTAGACCAAGTTGAAGGAAGCACAAACAGGATTGTTGGAACATATGGCTATATATCTCCAGAATATGCAATGCACGGATATTTTTCTATAAAATCCGATGTCTTTAGTTTTGGAGTGATGATGCTCGAGATTATCAGTGGAAGAAAGAATTCATATTCTTATGAATCATGTCGCATTGATGATCTCTTGAGCAATGCTTGGAGAAAATGGAGGGATGAATCAATAGAGGAATTGATGGATCCAGCAGTGAGAGAATCATATTCTCAACAAGAAGTGTTTAGGTGCATCCAGATTGGTTTATTGTGCGTTCAAGAAAATCCAGATGATAGGCCTACAATGGGAAACGTTGCTTCATATCTTAGCAACATTACAGTTGAATTGCCATATCCTCTGGAACCTGCGTTTTTCATGCAAGGTAGAAGAAGAAGAAACCATATGCATGATCCCAATTCTGATCACTCCACCAATTACTCTGTCTCCTCAACCATTAATGAGATGTCCATCAGCAAATTTTTCCCTCGCTAA	2001	0.4318	MIAFVVFFFFIFIFSTTQSAASVFNDFNCTTNITFTPNGTFQSNLATLLSSLSSNATGGIRFYNTTVGGRGGANTVYGLFVCRGDVPYPLCSECVNFATQRISSSCPSAKEAIIWYNECLLRYSSRSIFSSMEEWPRYQVKIPLGDPGLLRTRRFYDTLGSILNDLIDGAAQALGKSDSKFGVQQGDASGNTTLYGLAQCTPDLATGDCKRCVRDAIAEITTSCCSGSIGQSVMFPSCIIRYETYPFYQHAGTSTLTPVAAANGKSNKLRTQIIAIIVPSIIVLVAILVFCFYMAPRRNSNSKKKSQKATDLSENFGVEIITTMDSLQIDIATIKVATDNFSEKSRIGKGGFGEVYKGVLPNGQEIAVKRLSRTSSQGVEEFKNEVLLIAKLQHRNLVRLLGFCLEDDEKILIYEYVPNKSLNHFLFDPLKQRELTWPERFKIIKGIARGILYLHEDSRLKVIHRDLKPSNVLLDSNLSPKISDFGMARLITLDQVEGSTNRIVGTYGYISPEYAMHGYFSIKSDVFSFGVMMLEIISGRKNSYSYESCRIDDLLSNAWRKWRDESIEELMDPAVRESYSQQEVFRCIQIGLLCVQENPDDRPTMGNVASYLSNITVELPYPLEPAFFMQGRRRRNHMHDPNSDHSTNYSVSSTINEMSISKFFPR	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3914g00019	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Pral3914g00019	666	Pfam	Protein tyrosine and serine/threonine kinase	344	611	IPR001245	GO:0004672\|GO:0006468
	Pral3914g00019	666	ProSiteProfiles	Protein kinase domain profile.	341	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3914g00019	666	Gene3D	-	150	247	IPR038408	-
	Pral3914g00019	666	Gene3D	-	22	127	IPR038408	-
	Pral3914g00019	666	ProSiteProfiles	Gnk2-homologous domain profile.	137	247	IPR002902	-
	Pral3914g00019	666	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	22	127	-	-
	Pral3914g00019	666	CDD	STKc_IRAK	347	615	-	-
	Pral3914g00019	666	SMART	serkin_6	341	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3914g00019	666	Pfam	Salt stress response/antifungal	153	245	IPR002902	-
	Pral3914g00019	666	Pfam	Salt stress response/antifungal	29	125	IPR002902	-
	Pral3914g00019	666	ProSiteProfiles	Gnk2-homologous domain profile.	23	128	IPR002902	-
	Pral3914g00019	666	FunFam	cysteine-rich receptor-like protein kinase 10	417	619	-	-
	Pral3914g00019	666	SUPERFAMILY	Protein kinase-like (PK-like)	328	643	IPR011009	-
	Pral3914g00019	666	ProSitePatterns	Protein kinases ATP-binding region signature.	347	369	IPR017441	GO:0005524
	Pral3914g00019	666	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	24	661	-	-
	Pral3914g00019	666	FunFam	Cysteine-rich receptor-like protein kinase 10	298	416	-	-
	Pral3914g00019	666	Gene3D	Phosphorylase Kinase; domain 1	299	416	-	-
	Pral3914g00019	666	Gene3D	Transferase(Phosphotransferase) domain 1	417	620	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3914g00019	Pral-Chr3914	154808	158838	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3914g00019	6	666	Receptor kinase-like Gene Family	AT4G05200	44.152	0.0	569

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral3914g00019		PK_Tyr_Ser-Thr	5.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3914g00019	-		-	var:108324780	855.129