LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3914g00016	ATGATTGTTACCCAGAAAGAGGTAACTACACAAATTCAAGTGCCTATGACACCAACCTCAAGACCCTCCTTTCTGGTTTCACTTCCGACGACACAAACATTGAATATGGCTTCAATCAATTCGTCTTATGGCCAAAACCCAGACGTAGTTCACGCATTTGGATTCTGCAGAGGCGATGTTAAGCCAGATTCTTGCCGTAGTTGCCTCCTCAACGCCGCAATCCTTCTCCCACAACTATGTCCAAATCAGAAGGAAGAAGTTGGATACTATGACAATTGCACGTTTCGATACTCACACCGTTCATTATTTGGAATATACAACGTCTCTGATAGAATATTCTTTGCGTGGAGTCAACAAAGTTCAACGACACTTAACGATATATATGTTCAGGTACAATTGGATAAAGTAGAGGACCAAGCACCAATTGGGGATTCTCATCGTAAGTTTGCAGCAGCAAATGATAGTACAAGCGAATCTGGGGAAGTGTATGCCTTTGCTCAGTGCAGCCCAGATCTGTCTGAGGATTATTGCAGGTCCTGCTTACAGAATGTTTCCAGTAGAATCCAAATATGCTGTGACGGAAGGAATGGTGGTAGGGTTTTCAATCCCAGCTGCTATATTAGATATGAGAGCTACCTCTTCTATGATTACACGGCTGTTTCAACACAGCCACCTCCTCCGCCATCCACCGCTGTAACGCTGCCCCAAGGAGGAAGTGATAGCACTGGATCACAAACTGCGGTCAAGATCACTGTCCCCATCATCGTTGCAGTGATATTTTGTTGTTTGGTGGGTTGCTATTTGCTGAGGAGAAAAACAAGGAAGAGAAGCCAATCTATTCTTACAGACAGCTTTGGAGAAGAAGGTTCAAATCTGAGGTCCTTGCAATTTAGCTTGGTTACAATTGAAGCTGCAACAAATAAGTTTTCTGAAGAGAACAAAATAGGAAAAGGAGGATTTGGAGAAGTTTACAAGGGTGTTCTTCCTGATGGACGAGAAATTGCTGTAAAAAGACTTTCTAAAAGTTCTGGACAAGGAACATTAGAATTCAAGAATGAAATATTATTGATAGCCAAACTTCAACATAGAAATTTAGTGACCTTATTGGGATTTTGTTTGGAAGAGCAAGAGAAAATTCTTATCTATGAATATGTGCCAAACAAGAGCATTGATTTCTTTTTATTTGATCCTGAAAAGCAACGAGTACTCGATTGGTTTGAGCGTTTCAAAATCATAAGAGGCATTGCACAAGGACTTTGTTACATGCATCAACATTCTCGGCTCAAAGTTATTCATCGGGATCTCAAACTTTGCAATATCTTATTAGATGACAAGATGAATCCAAAAATATCAGATTTTGGTATGGCCAGAATGATTGCTATAGATGAAGACCAGGGAAGTACAAAAAGAATTGTTGGAACATATGGCTATATGGCTCCTGAATATTTAATATATGGACACTTTTCAGAAAAATCTGATGTTTTTAGCTTTGGAGTCATAATTTTAGAATTACTTAGCGGCAAGAAGAATGCCAAATCTTATGAATCATTCCTTTTAGCTGATGTTTGGAAGCATTGGAAGGAGGGAACACCATTACAAATATTGGACCCTTGTCTGATGGAATCTTCTTGTCAAATAGAAGCAATGAGATGCGTTCAGATTGGGCTAGTATGTGTTCAAAAGAATCCAGATGAGAGGCCAACGATGGCTGAAGTTGTTTCATATCTTAGTAATCTTTCCATTGAATTGCCATCTCCAACAGAGCCACCATTCTTAATTCATTTAAATCCAACTATGTCAACAGAATGTAGTTCCGATCAAACAACTCAGAGCTCCAAGACAGTGGTTTCAAATGAAATATCCATCACAGAGATCTTGCCTCGGTGA	1887	0.3969	MIVTQKEVTTQIQVPMTPTSRPSFLVSLPTTQTLNMASINSSYGQNPDVVHAFGFCRGDVKPDSCRSCLLNAAILLPQLCPNQKEEVGYYDNCTFRYSHRSLFGIYNVSDRIFFAWSQQSSTTLNDIYVQVQLDKVEDQAPIGDSHRKFAAANDSTSESGEVYAFAQCSPDLSEDYCRSCLQNVSSRIQICCDGRNGGRVFNPSCYIRYESYLFYDYTAVSTQPPPPPSTAVTLPQGGSDSTGSQTAVKITVPIIVAVIFCCLVGCYLLRRKTRKRSQSILTDSFGEEGSNLRSLQFSLVTIEAATNKFSEENKIGKGGFGEVYKGVLPDGREIAVKRLSKSSGQGTLEFKNEILLIAKLQHRNLVTLLGFCLEEQEKILIYEYVPNKSIDFFLFDPEKQRVLDWFERFKIIRGIAQGLCYMHQHSRLKVIHRDLKLCNILLDDKMNPKISDFGMARMIAIDEDQGSTKRIVGTYGYMAPEYLIYGHFSEKSDVFSFGVIILELLSGKKNAKSYESFLLADVWKHWKEGTPLQILDPCLMESSCQIEAMRCVQIGLVCVQKNPDERPTMAEVVSYLSNLSIELPSPTEPPFLIHLNPTMSTECSSDQTTQSSKTVVSNEISITEILPR	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3914g00016	628	ProSitePatterns	Protein kinases ATP-binding region signature.	315	337	IPR017441	GO:0005524
	Pral3914g00016	628	Pfam	Protein kinase domain	310	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3914g00016	628	FunFam	cysteine-rich receptor-like protein kinase 10	385	583	-	-
	Pral3914g00016	628	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	270	384	-	-
	Pral3914g00016	628	CDD	STKc_IRAK	315	579	-	-
	Pral3914g00016	628	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	430	442	IPR008271	GO:0004672\|GO:0006468
	Pral3914g00016	628	ProSiteProfiles	Gnk2-homologous domain profile.	1	102	IPR002902	-
	Pral3914g00016	628	Gene3D	-	116	214	IPR038408	-
	Pral3914g00016	628	Gene3D	-	19	101	IPR038408	-
	Pral3914g00016	628	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	64	624	-	-
	Pral3914g00016	628	SMART	serkin_6	309	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3914g00016	628	Pfam	Salt stress response/antifungal	39	99	IPR002902	-
	Pral3914g00016	628	Pfam	Salt stress response/antifungal	141	212	IPR002902	-
	Pral3914g00016	628	Gene3D	Phosphorylase Kinase; domain 1	270	384	-	-
	Pral3914g00016	628	ProSiteProfiles	Protein kinase domain profile.	309	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3914g00016	628	Gene3D	Transferase(Phosphotransferase) domain 1	385	584	-	-
	Pral3914g00016	628	ProSiteProfiles	Gnk2-homologous domain profile.	107	214	IPR002902	-
	Pral3914g00016	628	SUPERFAMILY	Protein kinase-like (PK-like)	293	611	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3914g00016	Pral-Chr3914	129198	148428	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3914g00016	40	628	Receptor kinase-like Gene Family	AT4G05200	44.354	2.11e-171	503

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral3914g00016		Pkinase	3.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3914g00016	-		-	pcin:129293778	753.821