Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3908g00008 ATGGCGAAAGAACGTGCTTTTCTCGTGAGTTCCAAAGCGGAGTTGAAACGGAAGGAGAAGCAACAGAAGAAGGCCAAGTCTGGCGGTTTTGAGTCCTTGGGTCTTAGCCCCAATGTGTACAGAGGAATCAAGCGAAAAGGTTATAAGGTGCCGACACCAATTCAGAGGAAGACGATGCCAATCATTCTCTCAGGTGCTGATGTTGTTGCCATGGCTCGTACTGGCTCTGGTAAAACCGCTGCGTTTCTGGTACCCATGCTTCAGCGTCTGAATCAGCATCTTCCTCAGGGTGGTGTTAGGGCTCTCATTTTGTCCCCTACAAGGGACTTGGCGCTTCAGACTTTGAAATTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTATTAGTTGGAGGTGACAGTATGGAAAGTCAGTTTGAGGAGTTAGCTCAAAATCCTGACATTATAATTGCAACGCCTGGTAGGCTTATGCACCATTTGTCTGAAGTTGATGACATGTCGCTGCGCACTGTCGAATATGTTGTTTTTGATGAGGCAGATTGTTTATTCGGCATGGGTTTTGCTCAGCAATTGCATCAAATTCTTACGCAGCTGGGTGAGAACCGTCAAACCTTGCTTTTCAGTGCTACATTACCTAGCGCCCTTGCTGAATTTGCAAAGGCTGGCCTGCGTGACCCTCAGCTTATTCGTCTGGATTTGGAAACTAAAATCAGCCCTGACCTGAAGCTTGCATTTTTCACGTTGAGGCAGGAAGAAAAATATGCAGCATTATTGTATTTGATTAGGGAGCAAATTAGTTCCGATCAGCAGACACTTATATTTGTATCCACGAAACATCATGTGGAATTTCTTAACACATTGTTTAGGGAAGAGGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATTCATATATCAAGGTTCAGGTCAAGAAAGACAATGTTGTTGATTGTGACAGATGTTGCTGCTCGGGGCATAGATATTCCATTACTTGATAATGTTATCAATTGGGACTTCCCCCCCAAGCCTAAAATATTTGTTCATCGAGTGGGGAGAGCTGCAAGAGCGGGGCGCACTGGTGCTGCCTTTTCTTTTGTAACTTCAGAGGATATGCCATACCTTTTGGATCTTCATTTGTTCCTCTCAAAACCAATCAGAGCTGCTCCAACTGAAGAGGAGGTTCTGCAGGATATGCAAGGAGCATTTTCCAAAATTGACCAGGCAATAGCAAAGGGAGAAACTGTTTATGGTCGTTTCCCTCAAAAGGTCTTAGATCTTGTATCAGACAGAGTTCAAGAAACCATTGATGCTTCTGCTGAGCTAATATCATTACAGAAGAGCTGTCAAAATGCATTTCGTTTATACTCGAAGACAAAACCCTTGCCTGCAAAGGAGTCTATTAGAAGAGTAAAAGATTTACCACGCGAGGGATTGCATCCAATATTCAAGAATGTATTGGAAACAGGGGAATTAATGGCACTTGCTTTTTCAGAGCACTTGAAAAAGTTTAGGCCAAAGCAGACTGTTTTGGAGGCTGAAGGTGAAGCAGCTAAATCAAAGCATCTGCAGGGACCTGCTAGTCAATGGGTTGATGTGATGAAGAAAAAAAGAGCCATTCATGAGAATATTATAAATTTAGTCCATGAGCAACGCTCAAAGAATAAGGAAGAAGAGGGGGAAATTCAATTGGATATGACGCCTTCTGTGGAGAAAGGGAAAAAAGTTTCAGCAGTATCTGGTTCTAAGAGAAAGCCACAAAGTTTCAAGGATGAGGAATTCTACATAAGCTCAATACCCCAAAATCACCATATGGAAGCAGGTCTTTCTGTCAGGGCTAAAGAAGACTTTTCTTCTAATAGATTGGAATCAGCTGTCCTCGATCTAGTTGCAGATGACAGTGCGGGCATTCAGAAACAAAAGTCAGTATATCATTGGGACAAGAAAAGTAAAAAGTACATCAAGCTAAACAATGGTGAGCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGGGTGGTGCAAAAGTGAAGGCCACCAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACACAATAAGATAGGTCATAAGGGGATGGATAATGAAGGTGATTCTTATGGAGCCACTAGTTCAGCAGGGCACTCCCGAGGCGGTCCCCGGAAATTTAAAGGCAGCAAGAAGCAGCATTCAGTGCCAAATGCTCATGTGCGTTCAGAGATCAAAGATCTTGATCAAATTCGAAAGGACAGGCAGAAGAAAGCTGACAGACTTTCTTATCTGAAGAGCCAGTCTGCTAAAAAGGGTAAAAAATTTGGTAAAAATGGGAAAAAAGGAAAGGGTGGTGGTGGACGTGGAAAGAAAGGGAAGGGAAGGTAA 2403 0.4311 MAKERAFLVSSKAELKRKEKQQKKAKSGGFESLGLSPNVYRGIKRKGYKVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLVPMLQRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAQQLHQILTQLGENRQTLLFSATLPSALAEFAKAGLRDPQLIRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREQISSDQQTLIFVSTKHHVEFLNTLFREEGIEPSVCYGDMDQDARKIHISRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGAAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVLQDMQGAFSKIDQAIAKGETVYGRFPQKVLDLVSDRVQETIDASAELISLQKSCQNAFRLYSKTKPLPAKESIRRVKDLPREGLHPIFKNVLETGELMALAFSEHLKKFRPKQTVLEAEGEAAKSKHLQGPASQWVDVMKKKRAIHENIINLVHEQRSKNKEEEGEIQLDMTPSVEKGKKVSAVSGSKRKPQSFKDEEFYISSIPQNHHMEAGLSVRAKEDFSSNRLESAVLDLVADDSAGIQKQKSVYHWDKKSKKYIKLNNGERVAANGKIKTEGGAKVKATKTGIYKKWKERSHNKIGHKGMDNEGDSYGATSSAGHSRGGPRKFKGSKKQHSVPNAHVRSEIKDLDQIRKDRQKKADRLSYLKSQSAKKGKKFGKNGKKGKGGGGRGKKGKGR 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3908g00008 800 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 405 IPR001650 -
Pral3908g00008 800 SMART DBP10CT_2 636 698 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pral3908g00008 800 CDD DEADc_DDX54 28 233 IPR033517 -
Pral3908g00008 800 Pfam DEAD/DEAH box helicase 52 219 IPR011545 GO:0003676|GO:0005524
Pral3908g00008 800 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 13 701 - -
Pral3908g00008 800 SMART helicmild6 285 366 IPR001650 -
Pral3908g00008 800 MobiDBLite consensus disorder prediction 775 800 - -
Pral3908g00008 800 CDD SF2_C_DEAD 251 359 - -
Pral3908g00008 800 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 56 IPR014014 GO:0003724
Pral3908g00008 800 Gene3D - 1 235 IPR027417 -
Pral3908g00008 800 MobiDBLite consensus disorder prediction 1 26 - -
Pral3908g00008 800 MobiDBLite consensus disorder prediction 741 771 - -
Pral3908g00008 800 Pfam Helicase conserved C-terminal domain 255 366 IPR001650 -
Pral3908g00008 800 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 232 IPR014001 -
Pral3908g00008 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 384 IPR027417 -
Pral3908g00008 800 SMART ultradead3 47 254 IPR014001 -
Pral3908g00008 800 Pfam DBP10CT (NUC160) domain 636 697 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pral3908g00008 800 MobiDBLite consensus disorder prediction 1 30 - -
Pral3908g00008 800 MobiDBLite consensus disorder prediction 697 800 - -
Pral3908g00008 800 Gene3D - 247 477 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3908g00008 Pral-Chr3908 95103 101390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3908g00008 30 399 Eukaryotic Initiation Factors Gene Family AT1G72730 33.602 3.18e-60 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3908g00008 K14808 - gmx:100817417 1244.95