Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3907g00001 ATGGCGCTTGATGATCAAGAAGTTGGATATTCTTCAAGCTATTGCCGTTCAAATAGAAGACACAAGTATGATGTGTTTTTAAGTTTTCGAGGAGAAGACACACGTAAGAATTTTGCAGACCACTTATATGCTGCTTTGTGTCTCAATGGACTGATAACTTTTAGAGATGAGGAAGAACTTGGGAGGGGAGAAATTATCAAACCAAGTTTGCTTCAAGCAATTGAAGAATCTTTGTCAGCAATTATTGTTCTCTCTAAAAACTATGCTGCATCCACATGGTGCTTAGATGAACTCCTAAAGATCCTTCATTCTAAGAAAGTGTTGGATCTTCATGTTTTTCCAATCTTTTATGGCGTAGACCCGTCTGATGTTCGGCATCAGAAAGGAAGTTTTGCAGAAGCCTTTGAAAAGCATGACCAGAAATTTGCAAACGATAAAGGGAAGGTGCAAAGATGGAGGGATGCTTTGAGAGAAGTTGCTGACTTGGCTGGCTGGAGCTCTAAAAATTGGTATGAAACGAAACTCATTGAAATCGTTACTGAAATGGTGAGGTCAAAAATAGATAATCAACCACCTTTTGATTCAAATGATGAAGATGATGATGAACTTGTTGGAATTGATGAAAAAATAGCAGACTTTGATTCATTTCTAGCAAATAAATCGGAGGAAGTTCAATTTGTAGGAATATGGGGAATGGGAGGGCTAGGCAAAACTACTCTTGCTAGAGCTATTTATGAGAGAATAAAAAAGAACTATGAATTTCATTTCTTTCTTCATAATGTGCGAGAGAAATCTGCACAAGATGGTGGTTTAATTGAATTGCAAAAGGAACTTCTTTCTCATCCGAAAAGGAGAATCAGAATGGAAGTGGGTAATTATTACGATGGAAGGGAGTTAATCAAAAGAATGTTGTGCAATACAAGAGTTCTACTTATCCTAGATGATGTCAGTGACATTAGCCAGCTTGTGAATTTGGCCGGAAAGAAAGGGTGGTTTGGTAAAGGGAGTAGAATAATAATAACAACAAGAGATCAGCATTTGTTAGTTCAGCATGGAGTTTCTCAATATGAGATGAATTTTTTAAGTCAGGTTGAGTCCCGTCAACTTTTTCTGCAAAAAACATTTAAAGGAGATCAACCAAATGGAGATTATTTGAAGCTTTTTGAAACTGTGATTGAATCTACCAAAGGACTTCCATTGGCACTCAAAGTGTTTGGTTCATTTCTTTGCGGAAGAAATACAATAGAATGGGAGGATGCACTCAAGAAGATTTCTTCTTCAGATCCCATTTTCAATATACTTAAAGTGAGCTTTGATGGACTAGAATATAATGAGCAGACTATATTCTTAGATGTTGCTTGCTTTTATAATGGGATGGCCAAGGATAAAGTCATACAAATTTTAGAAAATAGTGGTCTTCGCCCAATAATTGGAATAAAAATTCTTATCGAGAAATCATTGGTAACTGAGGTTAATGGGTTCTTGAGGGTGCATGACATGTTGCAAGAAATGGGTAAGGAAATTGTTTTTCGTGAGTCACCCAATGAAGCTGGCAAACGTAGCAGAATATGGTCCTTGGAGGATGCTAACCTTGTGCTTAGAAATAAGAGGGGAACTGAAACAATCCGTGGTATGGTGGTACAATTTGACAAAGCACATGTCATATATTTGGACCCTGAAGCCTTCTCAAATATGAGTAATCTCAGGTTACTTATCATATCACATTCTTCACTTGGCCATTTGAATCTTCTTCATGGACTTAAGTGCCTGCCCAACTCATTGAAAGTCATAAAATGGAAGGGGTATCCTTTACATTTCCTGCCAAGTCAAACTCAATTGGATGAACTTGTTGATCTTGAAATGAAACACAGCAAATTAAAGGAACTTTGGAGAGGAGATCAGTTTCTACAAAGTCTAAAGTTCATTGATTTGAGTCATTCAACAAACCTGATGAGAACATCAAATTTTGATAGAACCCCTAATCTTCAAAGATTAATTCTTAAAGGATGTACAAAGCTTGTTGAAGTTCACTGCTCTCTCGGGCAACACAAGAATCTTGTCATTGTTAATTTTGAAGGTTGCAAAAGTATTAAAAATCTTCCAACCAAATTGGAGATGAATTGCTTAGAGACATTTATTCTCTCTGGTTGTTCAAAAGTTAAAAGGCTTCCTGAGTTTGGTAAAGGCATGACATGTTTATCAGAGCTTAATGTAAAAGGGACTGCTATATCCAAACTGCCTCAGTCATTGGTCAATTTAACTGGTCTTGCTATATTAAATTTAAAGTATTGCAAAACCCTAGTATGTCTTCCAAGTGATTTTAAAAAATTGAAAGCTATAAAGGAGATCAATATTCGTGGTTGCTCAAAGTTGTCAAGGCTTCCAGAGAATTTGAATGAAAATGAGGCATTGGAGGTGCTTGATGTGGGTGGGACTGCTCTAAAAGAAGTGCCTTCGTCCCTCAATAATTTGAAAAAATTATCTCTTAGTGCATGCAATGCTTCTGCACAATCATCCTCGTGGAATCACTACTCTCTTCTCAAGCGGGCATTTAGGCTTCAAAGGCCTTCAATGAAATAG 2580 0.3694 MALDDQEVGYSSSYCRSNRRHKYDVFLSFRGEDTRKNFADHLYAALCLNGLITFRDEEELGRGEIIKPSLLQAIEESLSAIIVLSKNYAASTWCLDELLKILHSKKVLDLHVFPIFYGVDPSDVRHQKGSFAEAFEKHDQKFANDKGKVQRWRDALREVADLAGWSSKNWYETKLIEIVTEMVRSKIDNQPPFDSNDEDDDELVGIDEKIADFDSFLANKSEEVQFVGIWGMGGLGKTTLARAIYERIKKNYEFHFFLHNVREKSAQDGGLIELQKELLSHPKRRIRMEVGNYYDGRELIKRMLCNTRVLLILDDVSDISQLVNLAGKKGWFGKGSRIIITTRDQHLLVQHGVSQYEMNFLSQVESRQLFLQKTFKGDQPNGDYLKLFETVIESTKGLPLALKVFGSFLCGRNTIEWEDALKKISSSDPIFNILKVSFDGLEYNEQTIFLDVACFYNGMAKDKVIQILENSGLRPIIGIKILIEKSLVTEVNGFLRVHDMLQEMGKEIVFRESPNEAGKRSRIWSLEDANLVLRNKRGTETIRGMVVQFDKAHVIYLDPEAFSNMSNLRLLIISHSSLGHLNLLHGLKCLPNSLKVIKWKGYPLHFLPSQTQLDELVDLEMKHSKLKELWRGDQFLQSLKFIDLSHSTNLMRTSNFDRTPNLQRLILKGCTKLVEVHCSLGQHKNLVIVNFEGCKSIKNLPTKLEMNCLETFILSGCSKVKRLPEFGKGMTCLSELNVKGTAISKLPQSLVNLTGLAILNLKYCKTLVCLPSDFKKLKAIKEINIRGCSKLSRLPENLNENEALEVLDVGGTALKEVPSSLNNLKKLSLSACNASAQSSSWNHYSLLKRAFRLQRPSMK 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3907g00001 859 Pfam Leucine Rich Repeat 616 634 IPR011713 -
Pral3907g00001 859 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 165 IPR035897 -
Pral3907g00001 859 PRINTS Disease resistance protein signature 226 241 - -
Pral3907g00001 859 PRINTS Disease resistance protein signature 303 317 - -
Pral3907g00001 859 PRINTS Disease resistance protein signature 395 409 - -
Pral3907g00001 859 PRINTS Disease resistance protein signature 634 650 - -
Pral3907g00001 859 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Pral3907g00001 859 Gene3D - 188 355 IPR027417 -
Pral3907g00001 859 Gene3D - 360 442 IPR042197 -
Pral3907g00001 859 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 726 IPR044974 GO:0006952
Pral3907g00001 859 Pfam TIR domain 22 206 IPR000157 GO:0007165
Pral3907g00001 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 451 IPR027417 -
Pral3907g00001 859 Gene3D - 17 187 IPR035897 -
Pral3907g00001 859 SMART till_3 22 162 IPR000157 GO:0007165
Pral3907g00001 859 SUPERFAMILY "Winged helix" DNA-binding domain 429 533 IPR036390 -
Pral3907g00001 859 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Pral3907g00001 859 Pfam NB-ARC domain 220 427 IPR002182 GO:0043531
Pral3907g00001 859 Gene3D Ribonuclease Inhibitor 553 705 IPR032675 -
Pral3907g00001 859 Gene3D Ribonuclease Inhibitor 706 843 IPR032675 -
Pral3907g00001 859 SUPERFAMILY L domain-like 554 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3907g00001 Pral-Chr3907 28474 64456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3907g00001 6 827 WRKY Transcription Factor Family AT4G12020 30.142 1.55e-99 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3907g00001 - - pcin:129318967 855.514