Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3906g00001 ATGGCACTCGATGATCAAGAAGTTGGATATTCTTCAAGCTATTGCCGTTCAAATAGAAGACACAAGTATGATGTGTTTTTAAGTTTTCGAGGAGAAGACACCCGTAAGAATTTTGCAGACCACTTATATGCTGCTTTGTGTCACAATGGACTGATAACCTTTAGAGATGAGGAAGAACTTGGGAGGGGAGAAATTATCAAACCAAGTTTGCTTCAAGCAATTGAAGAATCTTTGTCAGCAATTATTGTTCTCTCTGAAAACTATGCTGCATCCACATGGTGCTTAGATGAACTCCTAAAAATCCTTCATTGTAAGAAAGAGTTAGGCCTTCATATATTTCCAATCTTTTATGGCATAGATCCGTCTGATGTTCGGCATCAGAAAGGAAGTTTTGCAACAGCCTTTGAAAAGCTTGAACAGAAATTTGCACATGACAAAGTGAAGAATTATCATGACTTTGGGCTACGCTTAATATTAATGTTATTATTCTGTTATCTTTTTAGGTATGAAACGAAACTCATTGAAATAGTTACTGAAAATGTGAGGTCAAGAATAGTTGATCACCCACAATTCGATTCAAATGATGAAGGTGTTGATGATGGACTTGTTGGAATTGATGAGAAAATAGCAGATTTTGATTCATTTCTAGCGAATAAATCGGAGGAAGTTCAATTTGTAGGAATATGGGGAATGGGAGGGTTAGGCAAAACTACTCTTGCTAGAATTGTTTATGAGAGGATACACAGAAACTATGAAGTTCATTTATTTCTTCATAATGTTAGAGAGGAATCTGTAAAAGATGGTGGTTTAATTTCACTGCAACAAAAACTTCTTTCCCGTTTGAAAAAATCAATCAGAATGGAAGTGTGTGACTGTTATGAAGGAAGAAAGCTGATAAGAAGAATGTTATGCAGTAAAAAAGTTCTACTTGTCCTTGATGATGTGAGTGACATAAGCCAACTTGAGAATTTGGCGGGAAAGGAAGGATGGTTTGGCAAAGGGAGTAGAATAATAATAACAACTAGAGATCAACATGTGTTATTGTTGCATGGTGTAGTTTCTCAGTATGAAATGAATTTCTTAAGTCACGATGAATCCCTTCAACTTTTTATTCAAATAGCTTTCAAAGGAGATCAGCCAAATGAAGATTATTTGGAGCTTTCTAGAAGGGCGATTAATTCTGCTCAAAACCTTCCTTTGGCAATCAAAGTGCTTGGTTCATTTCTTTGTGGAAGAAGCATACCAGAATGGGAGAATGCACTCAAGAAGATTCCTTTAGATGGCCTTTTTGATATACTTAAAGTGAGCTTTGATGGACTGCGATCTAATGAGAAGAATATATTCTTAGATATTGCTTGCTTTTTCAATGGCTTGCGCAAGGATGATGTCATACAGATTTTAGAAAATAGTGGTCTTGACCCGGTAATCGGACTAAGAACTCTTATTCAGAAATCATTGGTAACTGAAGCTGAAGGGTGCTTGAGGGTGCATGATAGGCTTCAAGAAATGGGCAAGGAAATTGTTTTTCGCGAATCACCCAATGATGCTGGCAATCGTAGTAGGATATGGTCCTTGGAGGATGCTAGTCTTGTGCTTAGAAATATGAGGGTAACACTCTCCCCCTTTTCTATGATTATGCATTCTTACTTCAGCAATATATTCCATGCATTTTTCATGTTATTATTAGTTGGAACTGAAGCAATACGTGGTATAGTGGTACAATTTGACAAACCAGATGTCATATATTTGGAACCTAAAGCCTTCTCAAATATGAGTAATCTCAAGTTACTTATCATATCACATTCTTCACATGACCAATTGAATCTTCTTCATGGACTTAACTGTCTTCCCAATTCACTGAAAGTCATAGATTGGAAGGAGTATCCTTTAGATTCCCTTCCAGGTCAAACTCAATTTGATGAACTTGTTGATCTCAAAATGCAACACAGCAAATTAAAGGAACTTTGGAGAGGAGATCAGTTTCCACAAAGTCTAAAGTTCATTGATTTGAGTCATTCAACAAACCTGATGAGAACATCAAATTTTGATAGAACTCCTAATCTTCAAAGATTAATTCTTGAAGGGTGTACAAAGCTTGTTGAAGTTCACTACTCTCTCGGGCAACACAAGAATCTTGTCATTGTTAATTTTAAAGGTTGCAAAAGTATTAAAAACCTTCCAACCAAATTGGAGATGAATTGCTTAGAGACATTTATTCTCTCTGGTTGTTCAAAAGTTAAAAGGCTTCCTGAGTTTGGTAAAGGTATGACATGTTTATCAGAGCTTAATCTAAAAGGGACTGCTATATCCAAACTACCTCAATCATTGGTCAATTTGACTGGTCTTGCTATATTAAATTTAGAGTATTGCAAAAACCTGGTATGTCTTCCAAGTGATTTTAAAAAATTGAAAGCTATAAAGAAGATCAATGTTCGTGGTTGCTCAAAGTTGTCAAGGCTTCCAGAGAATTTGAATGAAAATGAGGCATTGGAGGAGCTTGATGTGGCTGGAACTGCTCTAAAAGAAGTGCCTTCGTCCCTCAATAATTTGAAAGTATTATGTCTTAGTGCATGCAATGCTTCTGCACAATCATCCTCATGGAATCACTACTCTCTTCTCAAGCGGGCATTTAGGCTTCAAAGGCCTTCAAGTTCAACTAAGTTTTTGTGGTCTCCATATTTTTCAAATCTATCATCTTTGGTCCAGTTACATTTAAATTATTGCAATCTTGATGATGAATCACTATTCAGTGAAATAGGCAATTTATCATCATTGACAACATTAGGTTTGGGTGGAAATAATTTTGTTGAAATTCCTTTGAGCTTCATTTCCAAACTTCGAAAGCTTGAATTTATTTATTTGAATGATTGCCCAAGGCTTCGGTCTTTGCCTCAACTTCCAGCAAACCTGTCAGTGATAGATGCTAGTGATTGTCCATTATTGAAAAATTATGTGTGTTCACAACAACTATGGGAATTCACTGAGGAATTTGAATATCAGACTCCATGCCGATATGAATTCTCATTAGAAGATGGATATAAATTTTACACTTTCAGTGACATGATGTCTGGAATTGTGAGTTGGAACAATTCACAAGTTGATGACTTCTTCCTGCAACCGACTCGCATATTAACTATTCCTGGTAGTGAAGTGCCATCATGGTTTCACAAT 3171 0.362 MALDDQEVGYSSSYCRSNRRHKYDVFLSFRGEDTRKNFADHLYAALCHNGLITFRDEEELGRGEIIKPSLLQAIEESLSAIIVLSENYAASTWCLDELLKILHCKKELGLHIFPIFYGIDPSDVRHQKGSFATAFEKLEQKFAHDKVKNYHDFGLRLILMLLFCYLFRYETKLIEIVTENVRSRIVDHPQFDSNDEGVDDGLVGIDEKIADFDSFLANKSEEVQFVGIWGMGGLGKTTLARIVYERIHRNYEVHLFLHNVREESVKDGGLISLQQKLLSRLKKSIRMEVCDCYEGRKLIRRMLCSKKVLLVLDDVSDISQLENLAGKEGWFGKGSRIIITTRDQHVLLLHGVVSQYEMNFLSHDESLQLFIQIAFKGDQPNEDYLELSRRAINSAQNLPLAIKVLGSFLCGRSIPEWENALKKIPLDGLFDILKVSFDGLRSNEKNIFLDIACFFNGLRKDDVIQILENSGLDPVIGLRTLIQKSLVTEAEGCLRVHDRLQEMGKEIVFRESPNDAGNRSRIWSLEDASLVLRNMRVTLSPFSMIMHSYFSNIFHAFFMLLLVGTEAIRGIVVQFDKPDVIYLEPKAFSNMSNLKLLIISHSSHDQLNLLHGLNCLPNSLKVIDWKEYPLDSLPGQTQFDELVDLKMQHSKLKELWRGDQFPQSLKFIDLSHSTNLMRTSNFDRTPNLQRLILEGCTKLVEVHYSLGQHKNLVIVNFKGCKSIKNLPTKLEMNCLETFILSGCSKVKRLPEFGKGMTCLSELNLKGTAISKLPQSLVNLTGLAILNLEYCKNLVCLPSDFKKLKAIKKINVRGCSKLSRLPENLNENEALEELDVAGTALKEVPSSLNNLKVLCLSACNASAQSSSWNHYSLLKRAFRLQRPSSSTKFLWSPYFSNLSSLVQLHLNYCNLDDESLFSEIGNLSSLTTLGLGGNNFVEIPLSFISKLRKLEFIYLNDCPRLRSLPQLPANLSVIDASDCPLLKNYVCSQQLWEFTEEFEYQTPCRYEFSLEDGYKFYTFSDMMSGIVSWNNSQVDDFFLQPTRILTIPGSEVPSWFHN 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3906g00001 1057 SMART till_3 22 160 IPR000157 GO:0007165
Pral3906g00001 1057 ProSiteProfiles TIR domain profile. 21 185 IPR000157 GO:0007165
Pral3906g00001 1057 SUPERFAMILY L domain-like 808 982 - -
Pral3906g00001 1057 Gene3D Ribonuclease Inhibitor 876 996 IPR032675 -
Pral3906g00001 1057 Pfam NB-ARC domain 219 424 IPR002182 GO:0043531
Pral3906g00001 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 451 IPR027417 -
Pral3906g00001 1057 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 161 IPR035897 -
Pral3906g00001 1057 Gene3D Ribonuclease Inhibitor 733 871 IPR032675 -
Pral3906g00001 1057 Pfam TIR domain 22 152 IPR000157 GO:0007165
Pral3906g00001 1057 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 185 - -
Pral3906g00001 1057 Gene3D - 15 187 IPR035897 -
Pral3906g00001 1057 PRINTS Disease resistance protein signature 777 793 - -
Pral3906g00001 1057 PRINTS Disease resistance protein signature 395 409 - -
Pral3906g00001 1057 PRINTS Disease resistance protein signature 225 240 - -
Pral3906g00001 1057 PRINTS Disease resistance protein signature 302 316 - -
Pral3906g00001 1057 Gene3D - 201 351 IPR027417 -
Pral3906g00001 1057 SUPERFAMILY L domain-like 580 862 - -
Pral3906g00001 1057 Gene3D Ribonuclease Inhibitor 574 732 IPR032675 -
Pral3906g00001 1057 Pfam Leucine Rich Repeat 642 660 IPR011713 -
Pral3906g00001 1057 SUPERFAMILY "Winged helix" DNA-binding domain 429 532 IPR036390 -
Pral3906g00001 1057 Gene3D - 360 441 IPR042197 -
Pral3906g00001 1057 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 751 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3906g00001 Pral-Chr3906 6331 9965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3906g00001 6 853 WRKY Transcription Factor Family AT4G12020 28.999 1.87e-91 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3906g00001 - - pcin:129318967 992.26