Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral389g00006 ATGACCCCCAGCGTCATGAAGCTCACCGTCAAGACTTTGAAAGGAAGTCATTTCGACATCAGGGTTCAACCTTCAGACACTGTCATGGCTGTGAAGAAGAATATAGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAGTTGCTTATTTTTAATGGCAAGGTTTTGAAAGATGAAACTACACTAGCGGAGAACCAGGTCGCTGAAAATGGATTTCTTGTTGTCATGCTTAGCAAGAGTAAAACTTCAAGTTCATCCGGGGCTTCATCCACTCAGCCTATTAACAATCAATGTTCAACTACGTCAACCCAAAATTCCACTCCTCCTATACCTGAACCCGAACCCGAACTTGCAGTACAAAGTACTCATGTGCCTGTGGATACTTATGGCCAGGCTGCTTCAAATTTAGCTGTTGGTGGTGATCTTGAGCGGACTATTCAACAAATCATGGACATGGGAGGTGGCAACTGGGACAGAGAGACAGTTATACGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAGGTTGCCATGCCGGTTCCTCATTACCCAGTCAGTCAGACAACTGAAACAGGTGGGGCCACTGCTGGAGGTGTTTCCGGGGCACCTAATACTTCACCATTAAACATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGACTTGGATCTCTGGAATTCCTTAGAAATAACCCGCAGTTTCAAGCATTGCGATCAATGGTACATTCTAATCCTCAAATTCTGCAGCCTGTACTTCAAGAGCTTGGAAAGCAGAATCCTCATCTATTAAGACTTATTCAGGAGCATCATGCTGAATTTCTCCAGTTAATGAATGAACCCATGGAAGGTTCTGAAGGTGACATATTTGACCAGCCTGAGCAAGATATGCCTCATTCCATCAATGTGACTCCAGCGGAACAGGAGGCAATTGGAAGGCTCGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTTGAGAATGCTGGAGATTTTGAGGATTGA 1104 0.4502 MTPSVMKLTVKTLKGSHFDIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIFNGKVLKDETTLAENQVAENGFLVVMLSKSKTSSSSGASSTQPINNQCSTTSTQNSTPPIPEPEPELAVQSTHVPVDTYGQAASNLAVGGDLERTIQQIMDMGGGNWDRETVIRALRAAYNNPERAVDYLYSGIPEAAEVAMPVPHYPVSQTTETGGATAGGVSGAPNTSPLNMFPQETISGAGAGLGSLEFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLMNEPMEGSEGDIFDQPEQDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral389g00006 367 ProSiteProfiles Ubiquitin domain profile. 6 84 IPR000626 GO:0005515
Pral389g00006 367 Gene3D - 137 187 - -
Pral389g00006 367 Gene3D - 232 298 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral389g00006 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 145 185 IPR015940 -
Pral389g00006 367 Gene3D - 2 85 - -
Pral389g00006 367 NCBIfam UV excision repair protein Rad23 6 366 IPR004806 GO:0006289
Pral389g00006 367 Pfam UBA/TS-N domain 323 358 IPR015940 -
Pral389g00006 367 Pfam UBA/TS-N domain 145 182 IPR015940 -
Pral389g00006 367 MobiDBLite consensus disorder prediction 85 109 - -
Pral389g00006 367 SUPERFAMILY UBA-like 142 192 IPR009060 GO:0005515
Pral389g00006 367 CDD Ubl_Rad23 6 79 - -
Pral389g00006 367 Gene3D - 314 362 - -
Pral389g00006 367 SMART ubq_7 6 80 IPR000626 GO:0005515
Pral389g00006 367 PRINTS DNA repair protein Rad23 signature 317 333 IPR004806 GO:0006289
Pral389g00006 367 PRINTS DNA repair protein Rad23 signature 349 364 IPR004806 GO:0006289
Pral389g00006 367 PRINTS DNA repair protein Rad23 signature 334 348 IPR004806 GO:0006289
Pral389g00006 367 PRINTS DNA repair protein Rad23 signature 268 290 IPR004806 GO:0006289
Pral389g00006 367 FunFam UV excision repair protein RAD23 B 232 298 - -
Pral389g00006 367 FunFam UV excision repair protein RAD23 homolog 314 362 - -
Pral389g00006 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 321 361 IPR015940 -
Pral389g00006 367 MobiDBLite consensus disorder prediction 85 118 - -
Pral389g00006 367 SUPERFAMILY Ubiquitin-like 6 88 IPR029071 -
Pral389g00006 367 SMART uba_6 323 360 IPR015940 -
Pral389g00006 367 SMART uba_6 144 184 IPR015940 -
Pral389g00006 367 FunFam UV excision repair protein RAD23 6 85 - -
Pral389g00006 367 SUPERFAMILY XPC-binding domain 239 305 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral389g00006 367 PANTHER UV EXCISION REPAIR PROTEIN RAD23 6 356 - -
Pral389g00006 367 FunFam UV excision repair protein RAD23 homolog 137 187 - -
Pral389g00006 367 SMART CBM 240 283 IPR006636 -
Pral389g00006 367 SUPERFAMILY UBA-like 302 364 IPR009060 GO:0005515
Pral389g00006 367 Pfam Ubiquitin family 8 81 IPR000626 GO:0005515
Pral389g00006 367 Pfam XPC-binding domain 242 297 IPR015360 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral389g00006 Pral-Chr389 103409 117313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral389g00006 6 79 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 3.80e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral389g00006 K10839 - gmx:100804038 549.28