Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral389g00005 ATGACCCCCAGCGTCATGAAGCTCACCGTCAAGACTTTGAAAGGAAGTCATTTCGACATCAGGGTTCAACCTTCAGACACTGTCATGGCTGTGAAGAAGAATATAGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAGTTGCTTATTTTTAATGGCAAGGTTTTGAAAGATGAAACTACACTAGCGGAGAACCAGGTCGCTGAAAATGGATTTCTTGTTGTCATGCTTAGCAAGAGTAAAACTTCAAGTTCATCCGGGGCTTCATCCACTCAGCCTATTAACAATCAATGTTCAACTACGTCAACCCAAAATTCCACTCCTCCTATACCTGAACCCGAACCCGAACTTGCAGTACAAAGTACTCAGGCTACAATAAACAATTCATCAGGGGCAAACGTCATAGCTACAAATGTGCCTGTGGATACTTATGGCCAGGCTGCTTCAAATTTAGCTGTTGGTGGTGATCTTGAGCGGACTATTCAACAAATCATGGACATGGGAGGTGGCAACTGGGACAGAGAGACAGTTATACGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAGGTTGCCATGCCGGTTCCTCATTACCCAGTCAGTCAGACAACTGAAACAGGTGGGGCCACTGCTGGAGGTGTTTCCGGGGCACCTAATACTTCACCATTAAACATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGACTTGGATCTCTGGAATTCCTTAGAAATAACCCGCAGTTTCAAGCATTGCGATCAATGGTACATTCTAATCCTCAAATTCTGCAGCCTGTACTTCAAGAGCTTGGAAAGCAGAATCCTCATCTATTAAGACTTATTCAGGAGCATCATGCTGAATTTCTCCAGTTAATGAATGAACCCATGGAAGGTTCTGAAGGTGACATATTTGACCAGCCTGAGCAAGATATGCCTCATTCCATCAATGTGACTCCAGCGGAACAGGAGGCAATTGGAAGGCTCGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTTGAGAATGCTGGAGATTTTGAGGATTGA 1149 0.4482 MTPSVMKLTVKTLKGSHFDIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIFNGKVLKDETTLAENQVAENGFLVVMLSKSKTSSSSGASSTQPINNQCSTTSTQNSTPPIPEPEPELAVQSTQATINNSSGANVIATNVPVDTYGQAASNLAVGGDLERTIQQIMDMGGGNWDRETVIRALRAAYNNPERAVDYLYSGIPEAAEVAMPVPHYPVSQTTETGGATAGGVSGAPNTSPLNMFPQETISGAGAGLGSLEFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLMNEPMEGSEGDIFDQPEQDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral389g00005 382 Gene3D - 247 313 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral389g00005 382 ProSiteProfiles Ubiquitin domain profile. 6 84 IPR000626 GO:0005515
Pral389g00005 382 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 336 376 IPR015940 -
Pral389g00005 382 Pfam XPC-binding domain 257 312 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pral389g00005 382 Gene3D - 152 202 - -
Pral389g00005 382 Pfam UBA/TS-N domain 338 373 IPR015940 -
Pral389g00005 382 Pfam UBA/TS-N domain 160 197 IPR015940 -
Pral389g00005 382 SUPERFAMILY Ubiquitin-like 6 88 IPR029071 -
Pral389g00005 382 PANTHER UV EXCISION REPAIR PROTEIN RAD23 6 371 - -
Pral389g00005 382 Pfam Ubiquitin family 8 81 IPR000626 GO:0005515
Pral389g00005 382 MobiDBLite consensus disorder prediction 85 109 - -
Pral389g00005 382 FunFam UV excision repair protein RAD23 homolog 329 377 - -
Pral389g00005 382 SUPERFAMILY UBA-like 157 207 IPR009060 GO:0005515
Pral389g00005 382 CDD Ubl_Rad23 6 79 - -
Pral389g00005 382 FunFam UV excision repair protein RAD23 homolog 152 202 - -
Pral389g00005 382 SMART CBM 255 298 IPR006636 -
Pral389g00005 382 SMART ubq_7 6 80 IPR000626 GO:0005515
Pral389g00005 382 SUPERFAMILY XPC-binding domain 254 320 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral389g00005 382 SUPERFAMILY UBA-like 317 379 IPR009060 GO:0005515
Pral389g00005 382 FunFam UV excision repair protein RAD23 B 247 313 - -
Pral389g00005 382 PRINTS DNA repair protein Rad23 signature 283 305 IPR004806 GO:0006289
Pral389g00005 382 PRINTS DNA repair protein Rad23 signature 364 379 IPR004806 GO:0006289
Pral389g00005 382 PRINTS DNA repair protein Rad23 signature 332 348 IPR004806 GO:0006289
Pral389g00005 382 PRINTS DNA repair protein Rad23 signature 349 363 IPR004806 GO:0006289
Pral389g00005 382 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 160 200 IPR015940 -
Pral389g00005 382 Gene3D - 329 377 - -
Pral389g00005 382 MobiDBLite consensus disorder prediction 85 117 - -
Pral389g00005 382 NCBIfam UV excision repair protein Rad23 6 381 IPR004806 GO:0006289
Pral389g00005 382 SMART uba_6 159 199 IPR015940 -
Pral389g00005 382 SMART uba_6 338 375 IPR015940 -
Pral389g00005 382 Gene3D - 2 85 - -
Pral389g00005 382 FunFam UV excision repair protein RAD23 6 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral389g00005 Pral-Chr389 103409 117313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral389g00005 6 79 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 4.21e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral389g00005 K10839 - gmx:100804038 558.14