Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral389g00003 ATGACCCCCAGCGTCATGAAGCTCACCGTCAAGACTTTGAAAGGAAGTCATTTCGACATCAGGGTTCAACCTTCAGACACTGTCATGGCTGTGAAGAAGAATATAGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAGTTGCTTATTTTTAATGGCAAGGTTTTGAAAGATGAAACTACACTAGCGGAGAACCAGGTCGCTGAAAATGGATTTCTTGTTGTCATGCTTAGCAAGAGTAAAACTTCAAGTTCATCCGGGGCTTCATCCACTCAGCCTATTAACAATCAATGTTCAACTACGTCAACCCAAAATTCCACTCCTCCTATACCTGAACCCGAACCCGAACTTGCAGTACAAAGTACTCAGGCTACAATAAACAATTCATCAGGGGCAAACGTCATAGCTACAAATGTGCCTGTGGATACTTATGGCCAGGCTGCTTCAAATTTAGCTGTTGGTGGTGATCTTGAGCGGACTATTCAACAAATCATGGACATGGGAGGTGGCAACTGGGACAGAGAGACAGTTATACGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAGGTTGCCATGCCGGTTCCTCATTACCCAGTCAGTCAGACAACTGAAACAGGTGGGGCCACTGCTGGAGGTGTTTCCGGGGCACCTAATACTTCACCATTAAACATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGACTTGGATCTCTGGAATTCCTTAGAAATAACCCGCAGCCTGTACTTCAAGAGCTTGGAAAGCAGAATCCTCATCTATTAAGACTTATTCAGGAGCATCATGCTGAATTTCTCCAGTTAATGAATGAACCCATGGAAGGTTCTGAAGGTGACATATTTGACCAGCCTGAGCAAGATATGCCTCATTCCATCAATGTGACTCCAGCGGAACAGGAGGCAATTGGAAGGCTCGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTTGAGAATGCTGGAGATTTTGAGGATTGA 1101 0.4514 MTPSVMKLTVKTLKGSHFDIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIFNGKVLKDETTLAENQVAENGFLVVMLSKSKTSSSSGASSTQPINNQCSTTSTQNSTPPIPEPEPELAVQSTQATINNSSGANVIATNVPVDTYGQAASNLAVGGDLERTIQQIMDMGGGNWDRETVIRALRAAYNNPERAVDYLYSGIPEAAEVAMPVPHYPVSQTTETGGATAGGVSGAPNTSPLNMFPQETISGAGAGLGSLEFLRNNPQPVLQELGKQNPHLLRLIQEHHAEFLQLMNEPMEGSEGDIFDQPEQDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral389g00003 366 FunFam UV excision repair protein RAD23 homolog 152 202 - -
Pral389g00003 366 SUPERFAMILY XPC-binding domain 257 304 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral389g00003 366 ProSiteProfiles Ubiquitin domain profile. 6 84 IPR000626 GO:0005515
Pral389g00003 366 SMART uba_6 159 199 IPR015940 -
Pral389g00003 366 SMART uba_6 322 359 IPR015940 -
Pral389g00003 366 Gene3D - 152 202 - -
Pral389g00003 366 Pfam XPC-binding domain 265 296 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pral389g00003 366 SUPERFAMILY UBA-like 157 207 IPR009060 GO:0005515
Pral389g00003 366 Gene3D - 313 361 - -
Pral389g00003 366 Pfam UBA/TS-N domain 160 197 IPR015940 -
Pral389g00003 366 Pfam UBA/TS-N domain 322 357 IPR015940 -
Pral389g00003 366 MobiDBLite consensus disorder prediction 85 109 - -
Pral389g00003 366 CDD Ubl_Rad23 6 79 - -
Pral389g00003 366 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 320 360 IPR015940 -
Pral389g00003 366 SMART ubq_7 6 80 IPR000626 GO:0005515
Pral389g00003 366 Gene3D - 261 298 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral389g00003 366 SUPERFAMILY Ubiquitin-like 6 88 IPR029071 -
Pral389g00003 366 FunFam UV excision repair protein RAD23 6 85 - -
Pral389g00003 366 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 160 200 IPR015940 -
Pral389g00003 366 MobiDBLite consensus disorder prediction 85 117 - -
Pral389g00003 366 FunFam UV excision repair protein RAD23 homolog 313 361 - -
Pral389g00003 366 NCBIfam UV excision repair protein Rad23 6 365 IPR004806 GO:0006289
Pral389g00003 366 PANTHER UV EXCISION REPAIR PROTEIN RAD23 6 355 - -
Pral389g00003 366 Gene3D - 2 85 - -
Pral389g00003 366 PRINTS DNA repair protein Rad23 signature 348 363 IPR004806 GO:0006289
Pral389g00003 366 PRINTS DNA repair protein Rad23 signature 333 347 IPR004806 GO:0006289
Pral389g00003 366 PRINTS DNA repair protein Rad23 signature 267 289 IPR004806 GO:0006289
Pral389g00003 366 PRINTS DNA repair protein Rad23 signature 316 332 IPR004806 GO:0006289
Pral389g00003 366 Pfam Ubiquitin family 8 81 IPR000626 GO:0005515
Pral389g00003 366 SUPERFAMILY UBA-like 301 363 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral389g00003 Pral-Chr389 103408 117313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral389g00003 6 79 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 4.05e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral389g00003 K10839 - gmx:100804038 520.005