Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3892g00004 ATGGCTAGCATTACACAAGACCACATCAAAGATATCAATGACAGTAAAGATACATGGGCTATTGTTGCTCGTGTTCTCAGACGGTGGATTGCCTACAAGAAGACTCCACCCTACACACCCTGGAGGATTGGCCTGCTTCTTGTGGATGAGCTGGGTTATAGAATAGAGGGTTTTGTAACACAAAAAGGACTGTTTGAGCGTTACAAAAATGAACCCAAAGAGGGTGGCGTATACCACTTTGAAAACTTTGAGGTTGTTGACAATGGAGATCAATACAAAGTTACAGCACATTCGTGGAGGCTTAAGTTCCATGCTACTACCTACTTTGAAGAATTAGTTTTGCCAATTCCTGGTGAGGCGTACAACTTTGTCCCCATAAAAGATATTGCTGAATTCACAACAAAGAATGAGGGGCTGATTGATGTGATGGGCTTCCTCCATGGATTTGGCGCCTTGCAAGAGTACAAGAATGAGTTTGGAACTTCCAAGAGACTAAACCTCACTCTTGCTGACAAAAATGAACGCACAATAAATGTGGTGCTATTTGGTACTTGCGCAGTCAACACATTTAACAGCAAGAGTCATGAACTCCAGCCCCCTATTGTTGTGATGGTTAGGTTTGGCAGGCTTAACAAGCCTACGGCACATGGTCACATTACCAATGTGTTCGAAGCAACCAAGGTTTCATTCAATCCTAACATTCTAGAGGCGCAACTTTTACTACAAAGCCTTGATGAAACACTTGGAGGGAGCCAACGTTTCTCTCAGGTAACAAATGCCGATTATAGGCTTCTTGACAATGAGTCCCTGTTAACTTTTCCAACAAGGATCCATGTGGCTGAACTCTCCAAAATTAACAAGGCATGTGAGGTTGTGATCAAGGTTTTTGTTCAGAAAGTTGAAATCGCTTACGGCTGGGCTTACGATGGATGCGCATGCGACAGTAAACCATCACAAGAAAATGACAAACTTCAATGCAAAACTTGTAATAATGACGTTTTGGTCACCACGCCGAAATTTAAGGTCCATTATAAGGTGTTTGATTCAACGGGTAAATGTTCAGTCATATTTTTCAATCGTCTTGCTTCTAATCTCATTGGCTTCTCAGCTGAGGAGCTAAAGGAAAAGAGAAAAAAAAAACAAGGTTCTTTTCCTGAAGAACTAAGCAATTGCGTGGGTCAAGAAATGCTTATCAAGCTCAAAATCAAGGAAAACAACATCAAGTTTCGAAATAGCAGTATTGGAGTAACCCAGTACACTACTGATAAGGAGCTGCTACATCGGTTTACTTATTCTGACATTAAGGGAAGTCAACTTAACGTAACTAATAATGTTACTTTTGAGCAGTCCGCAGTTGAGTCTTCTGTCTCACAGCAACCAACAACGTCATCATCAAGTGGCATAGTGAGTGAGGACGGTGACGCTCCAGTATCTCAGTTGCTTGCCTCTCCGGATTTATTGTCCAAACGTAAAACATACACGGCTGATACCTTTATTGATGTTGATGAGATGCGACTGTCTAACCACTCAACTTCGAACTCCAGCTATATGAAGCTACTGAAGAACATTAAAAGGGAAGAGTGA 1584 0.4167 MASITQDHIKDINDSKDTWAIVARVLRRWIAYKKTPPYTPWRIGLLLVDELGYRIEGFVTQKGLFERYKNEPKEGGVYHFENFEVVDNGDQYKVTAHSWRLKFHATTYFEELVLPIPGEAYNFVPIKDIAEFTTKNEGLIDVMGFLHGFGALQEYKNEFGTSKRLNLTLADKNERTINVVLFGTCAVNTFNSKSHELQPPIVVMVRFGRLNKPTAHGHITNVFEATKVSFNPNILEAQLLLQSLDETLGGSQRFSQVTNADYRLLDNESLLTFPTRIHVAELSKINKACEVVIKVFVQKVEIAYGWAYDGCACDSKPSQENDKLQCKTCNNDVLVTTPKFKVHYKVFDSTGKCSVIFFNRLASNLIGFSAEELKEKRKKKQGSFPEELSNCVGQEMLIKLKIKENNIKFRNSSIGVTQYTTDKELLHRFTYSDIKGSQLNVTNNVTFEQSAVESSVSQQPTTSSSSGIVSEDGDAPVSQLLASPDLLSKRKTYTADTFIDVDEMRLSNHSTSNSSYMKLLKNIKREE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3892g00004 527 SUPERFAMILY Nucleic acid-binding proteins 286 407 IPR012340 -
Pral3892g00004 527 SUPERFAMILY Nucleic acid-binding proteins 121 245 IPR012340 -
Pral3892g00004 527 MobiDBLite consensus disorder prediction 452 474 - -
Pral3892g00004 527 Gene3D - 7 113 IPR012340 -
Pral3892g00004 527 Gene3D - 115 252 IPR012340 -
Pral3892g00004 527 Gene3D - 266 429 IPR012340 -
Pral3892g00004 527 Pfam Replication factor-A C terminal domain 305 406 IPR013955 -
Pral3892g00004 527 CDD RPA1_DBD_A_like 21 107 - -
Pral3892g00004 527 SUPERFAMILY Nucleic acid-binding proteins 8 111 IPR012340 -
Pral3892g00004 527 CDD RPA1_DBD_B_like 141 245 - -
Pral3892g00004 527 Pfam Domain of unknown function DUF223 45 137 IPR003871 -
Pral3892g00004 527 MobiDBLite consensus disorder prediction 452 472 - -
Pral3892g00004 527 PANTHER OS03G0429900 PROTEIN 9 478 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3892g00004 Pral-Chr3892 183888 186510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3892g00004 12 375 Core DNA Replication Machinery Family AT5G08020 20.997 2.66e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3892g00004 - - pcin:129301944 355.91