Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3890g00030 ATGGGTTCTTCGAACGGTGGCGTGCCGCCAGGTTTCCGGTTTCATCCGACCGATGAAGAACTTCTTCATTATTACTTGAAGAAGAAGGTGAACTTTCAGAAGTTTGATATGGAGGTCATTAGAGAAGTGGACTTGAACAAGATTGAGCCGTGGGACTTGCAAGAAAGGTGTAGAATAGGGTCCACACCACAGAACGAGTGGTACTTCTTCAGCCACAAGGACAGGAAGTATCCGACGGGGTCGAGGACAAACCGGGCAACGAACGCCGGCTTCTGGAAGGCCACCGGACGAGACAAGTGCATCCGAAACAGCTTCAAGAAAATTGGCATGAGGAAGACTCTCGTCTTCTATAGAGGCCGAGCTCCTCATGGCCACAAGACTGACTGGATCATGCATGAATATCGCCTCGAAGATGCTGACGATGCCCAACCTAATCCCAATGAAGATGGGTGGGTGGTTTGCAGAGTGTTCAAGAAGAAGAACCTATTCAAAATTGGAAATGAAGGAACCTCCATGCATAACACAGACCAACAACTCAACAATTCCTCAAGCATCAACCAACCCCGCTCCTTCATGCGCAGAGAGAGCCAATACTTAATGCATCATCATCATCAACAACAGCAAAACCCCAGAAACTCTTCTGGGTTCCAACTTGAAAAACCCGAGCTTGCTCTTCACTATCCCCCTCCTCACTTGCAAAACCCTCAATACTCTCTCTTCCAGGCTCAGCCCCTCCTTCCTCCTGCAGCTCACTACAATTCCTATTCATCAGCCCTACCTTCAGACACTCCTTCCATGGCTGCCAAACAACTCATGACGAACCCGGCCGGCGACTGTGATAGTGGCGGCAGTGAGGGCTTGAGGTACCAAGTTTCGGAGACCGGAAATATGGAGGTTGGCACGTGTGAACCCACAGGTCAAGAGATTGGAACAGGAAGAGAAGATCAAGGTGGGTTTAATGAATGGGGTGTGCTTGATAGGCTTGTGGTCACTTCTCATCATCTCGGAAATGAAGAATCATCTAAAGGAGTAAGGTTCGAGGATGCAAGTAATCCACAGTCTGTTCATCAGATCAATCATCAGCAGCAACTTTCATTGCGTGGAGAAGTCGACTTTTGGGGCTATGGAAAACAATAA 1137 0.4846 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVNFQKFDMEVIREVDLNKIEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYRGRAPHGHKTDWIMHEYRLEDADDAQPNPNEDGWVVCRVFKKKNLFKIGNEGTSMHNTDQQLNNSSSINQPRSFMRRESQYLMHHHHQQQQNPRNSSGFQLEKPELALHYPPPHLQNPQYSLFQAQPLLPPAAHYNSYSSALPSDTPSMAAKQLMTNPAGDCDSGGSEGLRYQVSETGNMEVGTCEPTGQEIGTGREDQGGFNEWGVLDRLVVTSHHLGNEESSKGVRFEDASNPQSVHQINHQQQLSLRGEVDFWGYGKQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3890g00030 378 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Pral3890g00030 378 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Pral3890g00030 378 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Pral3890g00030 378 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Pral3890g00030 378 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 226 - -
Pral3890g00030 378 MobiDBLite consensus disorder prediction 336 362 - -
Pral3890g00030 378 MobiDBLite consensus disorder prediction 346 362 - -
Pral3890g00030 378 FunFam NAC domain-containing protein 17 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3890g00030 Pral-Chr3890 518642 523875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3890g00030 1 374 NAC Transcription Factor Family AT1G33280 52.660 1.59e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral3890g00030 NAM 8.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3890g00030 - - gmx:100775746 572.392