Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3890g00027 ATGGTGGTGAATGAAAGGCCGTCGAAGAGGATGAAGAGGAGAGTTTCAGCCGATCTTTATGATTTTCTCACTTTTCCGGCCGCCGATGACCGCTGCTGCGACGATATGGTCGGTGGCGGTCAACCGTTCCGGAAAACCGTTCAGCGGTTTCTTACTAATTATGCGATGGTCACCTATCCCCCGTCGTTATTTTCCTCCTTGATGACGTGGCAGATATTGTTCCGGATCGGAGGACTCGTCGATGGGTCCGATCTTTCGCCGGCTATTGTTACTCTCGACATTGTGGAGGAGGACGTTACTCGATCTCGAACCTCAGTCTACTGTGATCAGTGCCGAGTTGTTGGCTGGAGTGGCCATCCTGTTTGCCGAAAGCGATATCACTTCATTATCCGAGCTTCAAATAATCACATGGAAGCATACGAAAGACCTTGCTCATTATGTGGGAAATCTACCCGATTATCGGAGCCAAGGTGTAAATGGTGTGATGCGGAGATTACTGTTCAAGATCTCGAGGATTGGGTGTATGGTCAAATTGAAGATAACACCCATCTTCTGCACGGGATTGTCCACTCCAATGGTTATGGCCATTTGCTTACACTTAATGGAAGAGAGGGTGGTTCAAGGCTTCTCTCTGGGTCTGACATAATGAGTTTCTGGGATAGGCTTTGCGCTGCACTTGCTGTTAGGAAAGTTAGTGTGATGGATTTGTCAAAGAAATTTGGGATGGAATACCGATTGCTTCATGCAATCATCAATGGGTGTTCTTGGTATGGGAATTGGGGTTATGAATTTGGGACTGGTAGCTATGCTCTCACTCAAGATTCGTACCAAAAAGCAGTGAATACCCTGTCAAGCATGCCCCTGTCGGATTTATTATTCCAGGATCGTGGGCCCCGAAGTCGCTGGCAGTGTGTTATTTCTCTTTATCAATCGTTGGCAGATGCTGAACTGTTAACGATCAAAGATCTGTTCTCCTTTTTAACGTCCTTAATTCGTGAGTTCCACAAGCCTCTGACGACAAGAACAACGAGTGCTGAAACTTGCAACGTGTTGTGTGCTTGGTCAAGCAAAGACGTTGAAGCTGTGCAACAGGCCTTGATCAAGGTACTGCTTGCGTCGGCTGCCTCTAGCGGGGCCAAATGGGTGACAAGACGAGCTCTCAAGGGTGCATTAAGTAGGAGTGTTGCGTCTCCAGAGCTTCTGGATTACAGTCTGAAATATCTGGGCGGAAAGTTAGCTGCCTATGGTATGGTGGTTAGGTCAAGATGCAATCCCTCATCCAGTGCTGTTGAGTTCAGGCTTGAAGCCTCGAATGTTATGGAAATTGAAGCTGGCACGAATTCAGGATATCCATCGAAAGAGCAAGTGATTGATGATTTGAGATTCTTGCTTGATTCGATTATTCATCCTGAAAGGATGGCAAGCTACAGGCCGAAGACGACGAGGAAGCGGGTGGCTGATTCAGCGAGGAAGCTCCTTGACTGCAAGCAGTTCATGAAGGATTACAGGCCTGATAATAACACGGCAGGTGAGCAAGTGCCTCCATGTATTAGGCTGTGGTGTCGCGTGGAGCTTTCCGATCAGCCAAAAGAAGATCCAGCCCCTCCCCCAGAACTGATTTTGCTGCCCTTGAATGCTACCGTAGCTGACCTCAAGAATGAGGCGACTACTACTTTTCAAGAAGTGTATGCCATGTATAAGAGGTTTCAAGCTGAGGAACTTCTGGAATATGGGTCTATCAAGGACAATCTCACAGTAAAGTTACTGCTTGGAACAAGTGGATCTGTCCGAGTTTTAGGTAAATGCCATGCAAAACATGGCCTAAACCGCTTCCGAATGGAAAGAGGGACAGAGACGTGGAAGGTTGATTGCCCTTGTGGGGCTAAGGACGATGATGGGGAGAAAATGTTGGCATGTGATACTTGCGGTGTTTGGCAACATACAAGGTGTGCTGGAATTGAGAATTCCATTGCTGTCCCTTCTAAGTTCGTTTGCATGAGATGCATCAGATCATACCGGAAGGAGGCCAAGAAACTGCCTGACCCCATTGAACAAAAAAACCTCCCTATGGATGAGGCAAAAATCCACCCCGTGAATGAAGCCAAAAACCAGCCTGTCGATGGAGGAAAAGACTACCATGTGGATGAAATAAACATAAGTTGGAAACAGAACACCTCTATTGATGAAGCAAGAACCCCCAGTAAAGCAACAACGTCGTGCAGGGGTGAGGTAGTGGCAGCAGACAGTCCTGCAGTTGCTTGTAACCTGGCTCTGAATTTTGGTGTTCGCTGA 2292 0.4743 MVVNERPSKRMKRRVSADLYDFLTFPAADDRCCDDMVGGGQPFRKTVQRFLTNYAMVTYPPSLFSSLMTWQILFRIGGLVDGSDLSPAIVTLDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRASNNHMEAYERPCSLCGKSTRLSEPRCKWCDAEITVQDLEDWVYGQIEDNTHLLHGIVHSNGYGHLLTLNGREGGSRLLSGSDIMSFWDRLCAALAVRKVSVMDLSKKFGMEYRLLHAIINGCSWYGNWGYEFGTGSYALTQDSYQKAVNTLSSMPLSDLLFQDRGPRSRWQCVISLYQSLADAELLTIKDLFSFLTSLIREFHKPLTTRTTSAETCNVLCAWSSKDVEAVQQALIKVLLASAASSGAKWVTRRALKGALSRSVASPELLDYSLKYLGGKLAAYGMVVRSRCNPSSSAVEFRLEASNVMEIEAGTNSGYPSKEQVIDDLRFLLDSIIHPERMASYRPKTTRKRVADSARKLLDCKQFMKDYRPDNNTAGEQVPPCIRLWCRVELSDQPKEDPAPPPELILLPLNATVADLKNEATTTFQEVYAMYKRFQAEELLEYGSIKDNLTVKLLLGTSGSVRVLGKCHAKHGLNRFRMERGTETWKVDCPCGAKDDDGEKMLACDTCGVWQHTRCAGIENSIAVPSKFVCMRCIRSYRKEAKKLPDPIEQKNLPMDEAKIHPVNEAKNQPVDGGKDYHVDEINISWKQNTSIDEARTPSKATTSCRGEVVAADSPAVACNLALNFGVR 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3890g00027 763 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 677 - -
Pral3890g00027 763 SMART PHD_3 623 669 IPR001965 -
Pral3890g00027 763 SUPERFAMILY FYVE/PHD zinc finger 614 672 IPR011011 -
Pral3890g00027 763 CDD PHD_MMD1_like 623 668 - -
Pral3890g00027 763 ProSitePatterns Zinc finger PHD-type signature. 624 668 IPR019786 -
Pral3890g00027 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 675 IPR013083 -
Pral3890g00027 763 Pfam PHD-finger 624 670 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3890g00027 Pral-Chr3890 391861 395398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3890g00027 86 668 PHD Transcription Factor Family AT5G22260 29.221 4.21e-84 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral3890g00027 PHD 6.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3890g00027 K26271 - qsa:O6P43_029942 1013.45