Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3890g00020 ATGACTCCGGCGAATCTGGCAGGCCAGTTTGGTGACACAACATACACAAAGGTCTTTGTAGGAGGCTTGGCTTGGGAGACTCAGAAGGAAACTATGAAGAAATATTTTGAGCAGTTTGGTGAGATCTTGGAGGCCGTCGTCATCACTGACAAAGCTACTGGCAAATCTAAAGGCTATGGATTCGTAACTTTTCGGGAACCAGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTGATAGATGGCAGAAGGGCTAACTGCAACCTGGCTTCTTTGGGTGTCCAGAGATCCAAGCCATCAACCCCAAAGCACGGAGGAGGAGGCAGGAACTTCAGGGTGATGGGTTCGTTTCAGACAGGGTTTGGAGGAGCAGGATCGACTTTTCCTTCTGCAGCGGCAGCAACACTTCCTCATTATGCTCTCCAGCAAGGAACACCCTATAATGTTTATGGGTACTCTCCATACTCACCAGATTACACTTACCCGGGCTACTATAGTGTTTATGGAGGAGCGACCCAGTACCCACTGTATGGAACTGGACCAGGAGGCATGATGACCGGTGGTGCGGCGGCAGCCACCACCATGTACCCATATCTGCAGTTCGGAGAAGGGAGCGGCAGCGGTGTAACTGGCGGCTACACTTCCGGTCAGGGCTACGGTGTCTACTACCCACCGCAGCTCTTTCAGTACTCTCCCATTACTTCATCTGCTGGCTACGCTCAGCACTATGGTCCACCTATGTCTCTTGCGCCTTCGCCTGCTTTGCAATCAGTGTGTTTTGCTGTGCCGCAGGCGTGA 801 0.5243 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGAGSTFPSAAAATLPHYALQQGTPYNVYGYSPYSPDYTYPGYYSVYGGATQYPLYGTGPGGMMTGGAAAATTMYPYLQFGEGSGSGVTGGYTSGQGYGVYYPPQLFQYSPITSSAGYAQHYGPPMSLAPSPALQSVCFAVPQA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3890g00020 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Pral3890g00020 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Pral3890g00020 266 PANTHER BOULE-RELATED 4 248 - -
Pral3890g00020 266 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Pral3890g00020 266 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Pral3890g00020 266 Gene3D - 4 112 IPR012677 -
Pral3890g00020 266 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pral3890g00020 266 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3890g00020 Pral-Chr3890 160995 168619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3890g00020 1 188 C2H2 Transcription Factor Family AT2G19380 27.751 3.95e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3890g00020 - - gmx:100781647 412.535